Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,326,047 – 9,326,148 |
Length | 101 |
Max. P | 0.896136 |
Location | 9,326,047 – 9,326,148 |
---|---|
Length | 101 |
Sequences | 3 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 83.13 |
Mean single sequence MFE | -14.73 |
Consensus MFE | -12.13 |
Energy contribution | -12.47 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.09 |
Structure conservation index | 0.82 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.896136 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9326047 101 + 27905053 ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACACACACACACACACCCACUCUCCAACCAACGAGCACUCACACAGCAAC------------ .......((((.((..((.(((((((.(((.....)))..))....))))).))..................(((........))).....)).))))...------------ ( -12.90) >DroSec_CAF1 96851 107 + 1 ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACAC------ACACACUCACUCUCCAGCCAACGAGCACUCACACACCAACACAGCCACACAC .......((((.(((.((.((((((..(((.....))).(((.....))).....------................))))))((....))...))..))).))))....... ( -16.90) >DroSim_CAF1 99132 93 + 1 ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACACACA--CACACACUCACUCUCCAGCCAACGAGCACUCACA------------------C .......(.(((((.....((((((..(((.....))).(((.....)))........--.................))))))....)))))).------------------. ( -14.40) >consensus ACAACAAGCUGAGUUAUGAGUUGGCAUAUGACUUUCAUUUUGAAAACCAACACACACA__CACACACUCACUCUCCAGCCAACGAGCACUCACACA_CAAC___________C .......(.(((((.....((((((..(((.....))).(((.....)))...........................))))))....)))))).................... (-12.13 = -12.47 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:59 2006