Locus 3436

Sequence ID 3R_DroMel_CAF1
Location 9,322,798 – 9,322,907
Length 109
Max. P 0.547539
window5514

overview

Window 4

Location 9,322,798 – 9,322,907
Length 109
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.91
Mean single sequence MFE -25.23
Consensus MFE -21.17
Energy contribution -21.28
Covariance contribution 0.11
Combinations/Pair 1.20
Mean z-score -1.25
Structure conservation index 0.84
SVM decision value 0.03
SVM RNA-class probability 0.547539
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9322798 109 + 27905053
GCUUCUGCAUGUGCGUGUCGUUAUUAGAGUCAAAAUUGUAUGACAUACAAGUUGAAGCCAAAUGCACGCAUAAGCUGAGUAACAAAAACAA-GAAAGGCAGUGAAAGAUC
((((..((.((((((((.((((....(..((((..((((((...)))))).))))..)..)))))))))))).)).))))...........-.................. ( -24.60)
>DroPse_CAF1 90862 96 + 1
GCUUGUGCAUGUGCGUGUCGUUAUUAGAGUCAAAACUGAAUGACAUGGAAGUUGAAGCCAAAUGCACGCAUAAGCCCAGCAACAGU-------------GGAUUGGGAU-
((((((((..(((((((((((..((((........))))))))).(((.........))).))))))))))))))(((((......-------------.).))))...- ( -26.60)
>DroEre_CAF1 95167 108 + 1
ACUUGUGCAUGUGCGUGUCGUUAUUAGAGUCAAAAUUGUAUGACAUACAAGUUGAAGC-AAAUGCACGCAUAAGCUGAGUAACAAAAACAA-GAACGGCAGUGAAAGAUC
.(((((((.((((((((.((((....(..((((..((((((...)))))).))))..)-.)))))))))))).))((.....))...))))-)................. ( -24.30)
>DroYak_CAF1 95267 109 + 1
GCUUGUGCAUGUGCGUGUCGUUAUUAGAGUCAAAAUUGUAUGACAUACAAGUUGAAGCCAAAUGCACGCAUAAGCUGGGUAACAAAAACAA-GAAAGGCAGUGAAAGAUC
.(((((((.((((((((.((((....(..((((..((((((...)))))).))))..)..)))))))))))).))((.....))...))))-)................. ( -25.60)
>DroAna_CAF1 91945 109 + 1
GUUUGUGCAUGUGCGUGUCGUUAUUAGAGUCAAAACUGUAUGACACACAAGUUGAAGCCAAAUGCACGCAUAAACCGAGAAACAACGACAAUGAAGGGUAGGUAAGGAG-
((((((((..(((((((((((...(((........))).))))))).....(((....)))..))))))))))))..................................- ( -23.70)
>DroPer_CAF1 94615 96 + 1
GCUUGUGCAUGUGCGUGUCGUUAUUAGAGUCAAAACUGAAUGACAUGGAAGUUGAAGCCAAAUGCACGCAUAAGCCCAGCAACAGU-------------GGAUUGGGAU-
((((((((..(((((((((((..((((........))))))))).(((.........))).))))))))))))))(((((......-------------.).))))...- ( -26.60)
>consensus
GCUUGUGCAUGUGCGUGUCGUUAUUAGAGUCAAAACUGUAUGACAUACAAGUUGAAGCCAAAUGCACGCAUAAGCCGAGUAACAAAAACAA_GAA_GGCAGUGAAAGAU_
(((((.((.((((((((.((((......((((........))))......((....))..)))))))))))).))))))).............................. (-21.17 = -21.28 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:57 2006