Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,321,111 – 9,321,203 |
Length | 92 |
Max. P | 0.671329 |
Location | 9,321,111 – 9,321,203 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -22.82 |
Energy contribution | -23.68 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.11 |
Mean z-score | -2.74 |
Structure conservation index | 0.74 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671329 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9321111 92 + 27905053 AACACAAGUGUACAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUACAGAGA-CAUCUCUGUCUCCGACU------CCGACUC----------AGAGUCGCAGUUGCA ..(((.(((((....))))).)))((....((((((....(((...((((((.-...)))))).)))((((------(......----------.))))))))))))). ( -29.60) >DroSec_CAF1 92053 92 + 1 AACACAAGUGUACAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUGCAGAGA-CAUCUCUGUCUCCGACU------CCGACUC----------AGAGUCGCAGUUGCA ..(((.(((((....))))).)))((....((((((....(((...((((((.-...)))))).)))((((------(......----------.))))))))))))). ( -29.90) >DroSim_CAF1 94164 92 + 1 AACACAAGUGUACAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUGCAGAGA-CAUCUCUGUCUCCGACU------CCGACUC----------AGAGUCGCAGUUGCA ..(((.(((((....))))).)))((....((((((....(((...((((((.-...)))))).)))((((------(......----------.))))))))))))). ( -29.90) >DroEre_CAF1 93533 97 + 1 AACACAAGUGUGCAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUACAGAGA-CAUCUCUGUCUCCGACUCCGACUCCGACUC----------AGAGUCGCAGUUGC- ..(((.(((((....))))).)))..((.(((.(((((((.......))).))-))..))).))..(((((.((((((......----------.)))))).))))).- ( -33.00) >DroYak_CAF1 93560 85 + 1 AACACAAGUGUACAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUACAGAGA-CAUCUCUGUCUCCG------------ACUC----------AGAGUCGCAGUCGC- ..(((.(((((....))))).)))......((((((....(((...((((((.-...)))))).)))(------------((..----------...)))))))))..- ( -28.10) >DroAna_CAF1 90042 103 + 1 AACACGAGUGUACAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUACAGACAUCUUCUCUGUUUCUGUCU------CAGUCUCCAUCGCCGCCACCGCCGCCGCAGCA ..(((((((((....)))))))))(((...(((.(..((((((...(((((.......))))).....)))------)))...).)))((.((....)).))))).... ( -34.60) >consensus AACACAAGUGUACAAACACUCGUGGCGAAAGAUUGUCCUGGGAAAUACAGAGA_CAUCUCUGUCUCCGACU______CCGACUC__________AGAGUCGCAGUUGCA ..(((.(((((....))))).)))......((((((....(((...((((((.....)))))).)))............(((((...........)))))))))))... (-22.82 = -23.68 + 0.86)
Location | 9,321,111 – 9,321,203 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 85.79 |
Mean single sequence MFE | -35.98 |
Consensus MFE | -25.23 |
Energy contribution | -26.28 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.07 |
Mean z-score | -3.17 |
Structure conservation index | 0.70 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.665649 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9321111 92 - 27905053 UGCAACUGCGACUCU----------GAGUCGG------AGUCGGAGACAGAGAUG-UCUCUGUAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGUACACUUGUGUU .((..((.(((((((----------(...)))------))))).))..(((((((-((.(((.......)))))).)))))).))(((((((((....))))))))).. ( -36.40) >DroSec_CAF1 92053 92 - 1 UGCAACUGCGACUCU----------GAGUCGG------AGUCGGAGACAGAGAUG-UCUCUGCAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGUACACUUGUGUU .((..((.(((((((----------(...)))------))))).))..(((((((-((.(((.......)))))).)))))).))(((((((((....))))))))).. ( -36.10) >DroSim_CAF1 94164 92 - 1 UGCAACUGCGACUCU----------GAGUCGG------AGUCGGAGACAGAGAUG-UCUCUGCAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGUACACUUGUGUU .((..((.(((((((----------(...)))------))))).))..(((((((-((.(((.......)))))).)))))).))(((((((((....))))))))).. ( -36.10) >DroEre_CAF1 93533 97 - 1 -GCAACUGCGACUCU----------GAGUCGGAGUCGGAGUCGGAGACAGAGAUG-UCUCUGUAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGCACACUUGUGUU -((.(((.(((((((----------(...)))))))).))).(((.((((((...-.))))))...)))..............))(((((((((....))))))))).. ( -38.30) >DroYak_CAF1 93560 85 - 1 -GCGACUGCGACUCU----------GAGU------------CGGAGACAGAGAUG-UCUCUGUAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGUACACUUGUGUU -((((((.((((...----------..))------------)).))...((((((-((.(((.......)))))).)))))))))(((((((((....))))))))).. ( -32.60) >DroAna_CAF1 90042 103 - 1 UGCUGCGGCGGCGGUGGCGGCGAUGGAGACUG------AGACAGAAACAGAGAAGAUGUCUGUAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGUACACUCGUGUU .(((((....)))))...(((((.(((..(((------.((..((.(((((.......))))).)))).))).....))).)))))((((((((....))))))))... ( -36.40) >consensus UGCAACUGCGACUCU__________GAGUCGG______AGUCGGAGACAGAGAUG_UCUCUGUAUUUCCCAGGACAAUCUUUCGCCACGAGUGUUUGUACACUUGUGUU .((.....((((((...........))))))...........((((((((((.....)))))..)))))..............))(((((((((....))))))))).. (-25.23 = -26.28 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:56 2006