Locus 3434

Sequence ID 3R_DroMel_CAF1
Location 9,320,566 – 9,320,672
Length 106
Max. P 0.884679
window5511

overview

Window 1

Location 9,320,566 – 9,320,672
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 92.92
Mean single sequence MFE -17.85
Consensus MFE -14.48
Energy contribution -15.24
Covariance contribution 0.76
Combinations/Pair 1.15
Mean z-score -1.78
Structure conservation index 0.81
SVM decision value 0.93
SVM RNA-class probability 0.884679
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9320566 106 + 27905053
AACUUUUUGCAUUCGAAUAUCAAAAUCAACAACUAGUUUUGUUGUUAGCCCUCGCUCCCGUUGCAUACUAUCUAUAAGUAGUAUGCCCCUACAGCUAUCAUCAUAA
..............((...........((((((.......)))))).......(((......(((((((((......)))))))))......)))..))....... ( -18.60)
>DroSec_CAF1 91515 106 + 1
AACUUUUUGCAUUCGAAUAUCAAAAUCAACAACUAGUUUUGUUGUUAGCCCUCGCUCCCGUUGCAUACUAUCUAUAAGUAGUAUGCCCCUACAGCUAUCAUCAUAA
..............((...........((((((.......)))))).......(((......(((((((((......)))))))))......)))..))....... ( -18.60)
>DroSim_CAF1 93612 106 + 1
AACUUUUUGCAUUCGAAUAUCAAAAUCAACAACUAGUUUUGUUGUUAGCCCUCGCUCCCGUUGCAUACUAUCUAUAAGUAGUAUGCCCCUACAGCUAUCAUCAUAA
..............((...........((((((.......)))))).......(((......(((((((((......)))))))))......)))..))....... ( -18.60)
>DroEre_CAF1 92956 102 + 1
AACUUUUUGCAUUCGAAUAUCAAAAUCAACAACUAGUUUUGUUGUUAGCCCUCGUUCGCGCUGCACACUAUCUAUAUA----CUACUUAUACAGCUAUCAUCAUAA
.......((((..(((((........((((((......)))))).........)))))...)))).............----........................ ( -11.33)
>DroYak_CAF1 92895 106 + 1
AACUUUUUGCAUUCGAAUAUCAGAAUCAACAACUAGUUUUGUUGUUAGCACUCGCUCCCGUUGCAUACUAUCUAUAAGUAGUGUGCCCCUACAGCUAUCAUCGUAA
.......(((((((........)))).((((((.......)))))).)))...(((......(((((((((......)))))))))......)))........... ( -22.10)
>consensus
AACUUUUUGCAUUCGAAUAUCAAAAUCAACAACUAGUUUUGUUGUUAGCCCUCGCUCCCGUUGCAUACUAUCUAUAAGUAGUAUGCCCCUACAGCUAUCAUCAUAA
..............((...........((((((.......)))))).......(((......(((((((((......)))))))))......)))..))....... (-14.48 = -15.24 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:54 2006