Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,312,107 – 9,312,208 |
Length | 101 |
Max. P | 0.561481 |
Location | 9,312,107 – 9,312,208 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -38.03 |
Consensus MFE | -23.91 |
Energy contribution | -25.85 |
Covariance contribution | 1.94 |
Combinations/Pair | 1.06 |
Mean z-score | -1.87 |
Structure conservation index | 0.63 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.561481 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9312107 101 + 27905053 ---AUGGUUAGAUGGG----------------AUGGAAAUCCGCAGCGUUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCGCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA ---..((((((.((((----------------(.((....))..((((((((..(((((.....)))))..)).((((((((........)))))))).))))))))))))))))).... ( -35.40) >DroSec_CAF1 83313 104 + 1 UAGGUGGUUAGAUGGA----------------AUGGAAGUCCGCAGCGUUGUGGGCCCGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA .....((((((.((((----------------((((..((((((......))))))))).((((((((((..(((...((....))))).)))))))))).....))))))))))).... ( -36.60) >DroSim_CAF1 84663 104 + 1 UAGGUGGUUAGAUGGG----------------AUGGAAGUCCGCAGCGUUGUGGGCCCGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA ..(((((..((.....----------------.(((..((((((......))))))))).((((((((((..(((...((....))))).))))))))))...))..)))))........ ( -36.40) >DroEre_CAF1 84114 104 + 1 UAGGUGGGUAAGUGGG----------------AAGGAAAUCCGCAGCGAUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA ....((((..((((((----------------(((.(..((((((....)))))).....((((((((((..(((...((....))))).)))))))))).).)))))))))...)))). ( -37.30) >DroYak_CAF1 84256 104 + 1 UUGGUGGAUAGGUGGA----------------AUGGAAAUCCGCAGCGUUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA (..(((((...(((((----------------.(....))))))((((((((..(((((.....)))))..)).((((((((........)))))))).)))))).)))))..)...... ( -40.70) >DroPer_CAF1 83191 111 + 1 -------UCAGAGCGAACAGUCGAACGGCCGAACGG--CCCAGCAGCCCAGGCUGCCAGCCAAACUGGCAGGCGCUCUGGCAGGCCCUGAUGUCAGUCAGAUGCUUUCCACUGAUUUUAA -------..((((((...........((((....))--))..(((((....)))))..(((.....)))...))))))((.((((.(((((....)))))..)))).))........... ( -41.80) >consensus UAGGUGGUUAGAUGGA________________AUGGAAAUCCGCAGCGUUGUGGGCCAGACUAACUGGCAGGCGGACUGGCAGGCCCUGAUGUCAGUUAGAUGCUUUCCACUGAUUUUAA .....((((((.((((........................((((......))))(((((.....)))))(((((((((((((........))))))))...))))))))))))))).... (-23.91 = -25.85 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:51 2006