Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,311,390 – 9,311,506 |
Length | 116 |
Max. P | 0.759346 |
Location | 9,311,390 – 9,311,506 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.00 |
Mean single sequence MFE | -37.65 |
Consensus MFE | -29.63 |
Energy contribution | -30.22 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.22 |
Mean z-score | -2.47 |
Structure conservation index | 0.79 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.759346 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9311390 116 - 27905053 AACC-UUUAGUGCCACUCCAAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ....-.....(((((((.((((...((((.........))))---..))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -39.00) >DroSec_CAF1 82610 116 - 1 AACC-UUUAGUGCCACUCCAAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ....-.....(((((((.((((...((((.........))))---..))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -39.00) >DroSim_CAF1 83967 116 - 1 AACC-UUUAGUGCCACUCCGAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ....-.....(((((((.((((...((((.........))))---..))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -38.70) >DroEre_CAF1 83477 114 - 1 AACCCUGUCCUGCCACUCGAAUUCUCGACGUGUGCUUAGUUG---UUAUUGUUGGUGGCAACAACAGC---AGCAUUGCAAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ...........(((((((((....)))).))).))...((((---((((.....))))))))..((((---((((((...((((.....(....).....))))...))))))))))... ( -33.90) >DroYak_CAF1 83583 117 - 1 AACCCUGUUCCGCCACUCCAAUUCUCGACGUGUGCCGAGUUG---UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC .....((((((((((...((((.((((........))))...---..)))).)))))).))))...(((((((((((.(.((((.....(....).....)))).).))))))))))).. ( -40.10) >DroAna_CAF1 81016 110 - 1 --------GCUGGCAGUGUAGUUUGUAGAGU-AGCUGUGUUGUUUUUGCUGCUGGUGGCAG-AACUACAGCAGCAUCUCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC --------....(((.((((((((((..(((-(((............))))))....))))-.))))))(((((((.((.((((.....(....).....)))).)).)))))))))).. ( -35.20) >consensus AACC_UUUACUGCCACUCCAAUUCUCGACGUGUGCUUAGUUG___UUAUUGUUGGUGGCAACAACAGCAGCAGCAUUGCGAUGGUAAACGUUAACUAAUUCCAUGGAAAUGCUGUUGCGC ..........(((((((.((((...((((.........)))).....))))..)))))))......(((((((((((.(.((((.....(....).....)))).).))))))))))).. (-29.63 = -30.22 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:50 2006