Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,307,977 – 9,308,079 |
Length | 102 |
Max. P | 0.592785 |
Location | 9,307,977 – 9,308,079 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.95 |
Mean single sequence MFE | -28.66 |
Consensus MFE | -19.25 |
Energy contribution | -19.76 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.20 |
Mean z-score | -1.61 |
Structure conservation index | 0.67 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.592785 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9307977 102 - 27905053 CUGC-----UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGUGUUGUGGCCAUAACUACAGUAU----CGGA-UGUA--CCAG----UGG-A- (..(-----(((.((.(((((((((((....((((((................))))))..)))))))).((((((......))))))...----))).-))..--))))----..)-.- ( -26.69) >DroPse_CAF1 76389 106 - 1 UUGC-----UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU----CGGG-CUGU--CCAGAG--UUGGAA ....-----(((((((...((((((((....((((((................))))))..))))))))...)))))))((((((((((..----...)-))))--....))--)))... ( -29.69) >DroWil_CAF1 78611 101 - 1 C---------GGCCGCCCAGUUUCGAACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAUUUUGUAAAUGG-UGUA--G-AA----UGG-G- .---------((((((...((..((((....((((((................)))))).))).)..))...))))))....(((((((........))-))))--)-..----...-.- ( -19.79) >DroYak_CAF1 79987 102 - 1 CUGC-----UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGAGCUGUGGCCAUAACUACAGUAU----CGGA-UGUA--CCAG----UGG-A- (..(-----(((.((.(((((((((((....((((((................))))))..))))))).(((((((......))))))).)----))).-))..--))))----..)-.- ( -29.49) >DroAna_CAF1 77960 114 - 1 UUGCUGGGCUGGCCAACCGGCGGCUGACUUUUAAAUAAACCAUAAAACAACACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU----CAGUCUGGAGCCCAGAGUCCGG-A- ...((((((((((((....((((((((....((((((................))))))..))))))))....))))).......(((...----....))).))))))).......-.- ( -36.09) >DroPer_CAF1 79654 103 - 1 UUGC-----UGGCCACCCGGCAGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU----CGGG-CUGU--CCAGAG--UUG--- ...(-----(((.((((((((((((((....((((((................))))))..)))))))).((((((......))))))...----))))-.)).--))))..--...--- ( -30.19) >consensus CUGC_____UGGCCACCCGGCGGCUGACUUUUAAAUAAACCAUAAAACAAGACUAUUUACUUCAGUUGCGUUGUGGCCAUAACUACAGUAU____CGGG_UGGA__CCAG____UGG_A_ ..........((((((...((((((((....((((((................))))))..))))))))...)))))).......................................... (-19.25 = -19.76 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:49 2006