Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,321,918 – 1,322,035 |
Length | 117 |
Max. P | 0.914748 |
Location | 1,321,918 – 1,322,035 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.11 |
Mean single sequence MFE | -29.90 |
Consensus MFE | -22.42 |
Energy contribution | -22.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -3.05 |
Structure conservation index | 0.75 |
SVM decision value | 1.10 |
SVM RNA-class probability | 0.914748 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1321918 117 + 27905053 ---ACGAUUGAUUUCAGAACUGCCAAGAACUGGAAAUGGUUUUUGGCUGUCCAAUUAAUUUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGCUUAGCCGGCGCUUAUCAAAAU ---..(((((.((((.(.((.((((((((((......)))))))))).)).)..(((.((((((((......)))))))).))))))))))))...((((.....))))........... ( -29.40) >DroSec_CAF1 10589 109 + 1 AAGAGGUUCGACUUUAAAACUGCCAAGAACUGGAAAUGGUUUUUGGCUGUCCAAUUAAUCUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGC-----------UUAUCAAAAU ..(((((.(((..((((.((.((((((((((......)))))))))).))....))))..))))))))..(((((...(((((((((....))).))))-----------)))))))... ( -27.20) >DroSim_CAF1 11645 109 + 1 GAGAGGUUCGACUUUAAAACUGCCAAGAACUGGAAACGGUUUUUGGCUGUCCAAUUAAUCUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGC-----------UUAUCAAAAU ..(((((.(((..((((.((.(((((((((((....))))))))))).))....))))..))))))))..(((((...(((((((((....))).))))-----------)))))))... ( -33.10) >consensus _AGAGGUUCGACUUUAAAACUGCCAAGAACUGGAAAUGGUUUUUGGCUGUCCAAUUAAUCUUGAUCUUAAUUGAUUAAAAGUGAGGAAUAAUCUAUCGC___________UUAUCAAAAU ..................((.(((((((((((....))))))))))).))..........((((((......))))))..(((((((....))).))))..................... (-22.42 = -22.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:50 2006