Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,304,621 – 9,304,717 |
Length | 96 |
Max. P | 0.654307 |
Location | 9,304,621 – 9,304,717 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 75.84 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -17.51 |
Energy contribution | -17.38 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.15 |
Mean z-score | -1.06 |
Structure conservation index | 0.70 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9304621 96 + 27905053 AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGUCUCGUCCCCAAUCCCCAAUCC--------------CGGAUCUUGAAUCUC----------GAGUCUCGAGUGUUCUG .((((((((((........))))))))))((.(((((((.((.....((....((((.......--------------.))))...))....)----------)))))))).))...... ( -23.60) >DroPse_CAF1 73092 72 + 1 AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGGGCCUCGUCUC-----------------------------------GAGUCUC----------GAGUGUU---CGUUCUG ...((((((((........))))))))(((((....((((((.((((...)-----------------------------------))).)))----------.)))...---))))).. ( -20.00) >DroSim_CAF1 77134 96 + 1 AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGUCUCGUCCCCAAUCCCCAAUCC--------------CGGAUCUUGAAUCUC----------GAGUCUCGAGUGUUCUG .((((((((((........))))))))))((.(((((((.((.....((....((((.......--------------.))))...))....)----------)))))))).))...... ( -23.60) >DroEre_CAF1 76604 110 + 1 AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGAGAGGCUGCGUCUCGUCCCCAAUCCCCAAUCCCCAAUCCCCAAUCCGGGAUCUUGAAUCUC----------GAGUCUCGAGUGUUCUG .((((((((((........))))))))))((((((.(...).))))))...................(((((......)))))...(((((((----------(.....)))).)))).. ( -28.90) >DroYak_CAF1 76610 95 + 1 AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGCCUCGUCCCCAAUCCCCAAUCC---------------GGAUCUUGAAUCUC----------GAGUCUCGAGUGUUCUG .((((((((((........))))))))))(..((((((...))))))..)...((((.......---------------))))...(((((((----------(.....)))).)))).. ( -25.50) >DroAna_CAF1 74561 92 + 1 AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGUGGCUGGGCCUCGUCUCA----------------------------GAUCUUGGGGCUCGUCCCUCUUGGACUCUUGAGUGUUCGG .((((((((((........))))))))))........(((((((((((((((----------------------------(...)))))))..((((.....))))....))).)))))) ( -28.90) >consensus AUCGUAAAAUUGGAUAUAAAAUUUUACGAGCGUGAGGCUGCGCCUCGUCCCCAAUCCCCAAUCC_______________GGAUCUUGAAUCUC__________GAGUCUCGAGUGUUCUG ...((((((((........))))))))(((((.(((((...))))).....................................(((((..(((..........)))..)))))))))).. (-17.51 = -17.38 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:46 2006