Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,302,974 – 9,303,066 |
Length | 92 |
Max. P | 0.829027 |
Location | 9,302,974 – 9,303,066 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 82.02 |
Mean single sequence MFE | -23.27 |
Consensus MFE | -15.82 |
Energy contribution | -16.02 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.06 |
Mean z-score | -2.39 |
Structure conservation index | 0.68 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829027 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9302974 92 - 27905053 UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCUCAGCAC-----AAUCCCACUAUUUCGCACUACUCCC-CCAGCUGGAUGCACCA (((((((..(((.(.(((((((((......))))))))).))-))))))).)-----).............((((((((...-..)).))).))).... ( -23.40) >DroSec_CAF1 74172 92 - 1 UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCCCCCUCAGCAC-----AAUCCCACUAUUUCGCACCACUCC--CCACCAGGCUGCACCA (((((((..(((.(.(((((((((......)))))))))))))..))))).)-----).............(((((.....--......)).))).... ( -24.90) >DroSim_CAF1 75487 94 - 1 UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCCCCCUCAGCAC-----AAUCCCACUAUUUCGCACCACUCCCCCCACCAGGCUGCACCA (((((((..(((.(.(((((((((......)))))))))))))..))))).)-----).............(((((.............)).))).... ( -24.72) >DroEre_CAF1 74967 84 - 1 UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCUCAGCAC-----AAGACCACUAUUCCCCAC---------CACCAAGCUGCACCA (((((((..(((.(.(((((((((......))))))))).))-))))))).)-----).................---------............... ( -19.40) >DroYak_CAF1 74868 84 - 1 UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCUCAGCAC-----AAACACACUAUUCCCCAA---------CACCAGGCUGCACCA (((((((..(((.(.(((((((((......))))))))).))-))))))).)-----).................---------.....((.....)). ( -20.10) >DroAna_CAF1 73094 94 - 1 UGGUUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC-CCAAAGCGCCCAAGAAACCCACUGUAUA----UACCCCCGUUCUAAGGGUGCACCA .(((.....(((.(.(((((((((......))))))))).))-))...((((((.((((.......((...----.)).....))))..))))))))). ( -27.10) >consensus UGGCUGACCGGGUGUCAUUAAAUGCCUGAUCGUUUAAUGCCC_CCUCAGCAC_____AAUCCCACUAUUUCGCAC_ACUCC__CCACCAGGCUGCACCA ..(((((..(((...(((((((((......))))))))))))...)))))................................................. (-15.82 = -16.02 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:40 2006