Locus 3424

Sequence ID 3R_DroMel_CAF1
Location 9,302,043 – 9,302,140
Length 97
Max. P 0.854851
window5493

overview

Window 3

Location 9,302,043 – 9,302,140
Length 97
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 82.62
Mean single sequence MFE -24.45
Consensus MFE -18.18
Energy contribution -18.07
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -2.46
Structure conservation index 0.74
SVM decision value 0.80
SVM RNA-class probability 0.854851
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9302043 97 + 27905053
AAAUUAAUAGUAUUUUUUGUCAG-UGCACGGGCAGCGGCAACGGCAGCCAUAUUGAAUGGAUUUGCACAAACGUGCAGAAAAACU-UUGCUGACACAAA
.................((((((-(.....(((.(((....).)).)))............(((((((....)))))))......-..))))))).... ( -26.20)
>DroPse_CAF1 70777 79 + 1
--------------------CAGCGGCAACGGCAAUGGCAACGGCAGCCAUAUUGAAUGGAUUUGCACAAACGUGCAGAAAAACUUUUGCUGACACAAA
--------------------..(((((((.(((..((....))...)))............(((((((....))))))).......)))))).)..... ( -22.70)
>DroSim_CAF1 74569 96 + 1
AAAUUAAUAGUAU-UUUUCUCAG-UGCACGGGCAGCGGCAACGGCAGCCAUAUUGAAUGGAUUUUCACAAACGUGCAGAAAAACU-UUGCUGACACAAA
.......((((((-((((((...-.((((((((.(((....).)).)))....((((......))))....))))))))))))..-.)))))....... ( -24.20)
>DroEre_CAF1 74015 96 + 1
AAAUAAAAAAAUU-UAUUUUCAG-UGCAAGGGUAGCGGCAACGGCAGCCAUAUUGAAUGGAUUUGCACAAACGUGCAGAAAAACU-UUGCUGACACAAA
(((((((....))-)))))((((-((.((((((.(((....).)).)))............(((((((....)))))))....))-)))))))...... ( -22.90)
>DroYak_CAF1 73957 96 + 1
GAAUAAAGAGUAU-UCUUUUCAG-UGCAAGGGCAGCGGCAACGGCAGCCAUAUUGAAUGGAUUUGCACAAACGUGCAGAAAAACU-UUGCUGACACAAA
......(((((..-(((.(((((-((....(((.(((....).)).))).))))))).)))(((((((....)))))))...)))-))........... ( -26.30)
>DroPer_CAF1 73858 79 + 1
--------------------CAGCGGCAACGGCAACGGCAACGGCAGCCAUAUUGAAUGGAUUUGCACAAACGUGCAGAAAAACUUUUGCUGACACAAA
--------------------(((((((..((....))((....)).)))............(((((((....))))))).........))))....... ( -24.40)
>consensus
AAAU_AA_AGUAU_U_UU_UCAG_UGCAAGGGCAGCGGCAACGGCAGCCAUAUUGAAUGGAUUUGCACAAACGUGCAGAAAAACU_UUGCUGACACAAA
.........................((....))..((((((.((...((((.....)))).(((((((....)))))))....)).))))))....... (-18.18 = -18.07 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:37 2006