| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,297,778 – 9,297,952 |
| Length | 174 |
| Max. P | 0.708161 |
| Location | 9,297,778 – 9,297,881 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.94 |
| Mean single sequence MFE | -23.08 |
| Consensus MFE | -14.79 |
| Energy contribution | -14.74 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603104 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9297778 103 - 27905053 GUGCAGAAAAUUGCAAAAUAUAUUGCCACGAGAGUUGGCAAGGCAUGAGAAAUAUGAUAUUAAAUAUUAUGAAAGCGGAU-----GAAAAU-----------GCACUGCACGU-UGCCAA .(((((....))))).......(((((((....).))))))((((((.....((((((((...))))))))...((((.(-----(.....-----------.)))))).)).-)))).. ( -26.50) >DroPse_CAF1 67631 103 - 1 GUGCAGAAAAUUGCAAAAUAUAUUGCUCUGAGACCUGCCAAGGCAUGAGAAAUAUGAUAUUAAAUAUUAUGAAAGGGGAA-----GAAAAU-----------GCACUGCACGU-UGUGAA ((((((......((((......))))(((....(((((....))........((((((((...))))))))..)))...)-----))....-----------...))))))..-...... ( -22.80) >DroWil_CAF1 70823 120 - 1 GUGUAGAAAAUUGCAAAAUAUAUUGCUGUGAAAAUUAUCAAGGCAUGAGAAAUAUGAUAUUAAAUGUUAUGAAAGCACAAAAUAUGUAUGUGCAUAAACCUGGCAAGGCACGACCGAGUA ((((......((((.........((((.(((......))).)))).......((((((((...))))))))...(((((.........))))).........)))).))))......... ( -21.20) >DroYak_CAF1 69848 103 - 1 GUGCAGAAAAUUGCAAAAUAUAUUGCCACGAGAGUUGGCAAGGCAUGAGAAAUAUGAUAUUAAAUAUUAUGAAAGCGGAU-----GAAAAU-----------GCACUGCACGU-UGCCAA .(((((....))))).......(((((((....).))))))((((((.....((((((((...))))))))...((((.(-----(.....-----------.)))))).)).-)))).. ( -26.50) >DroAna_CAF1 68132 101 - 1 GUGCGGAAAAUUGCAAAAUAUAUUGCACUUGGAGUUGGCCAGGCAUGAGAAAUAUGAUAUUAAAUAUUAUGAAAGGGGA-------AAAAU-----------GCACUGCACGU-UGCCAA ((((((.....(((((......)))))(((((......))))).........((((((((...))))))))........-------.....-----------...))))))..-...... ( -20.30) >DroPer_CAF1 70676 103 - 1 GUGCAGAAAAUUGCAAAAUAUAUUGCUCUGAGACCUGGCAAGGCAUGAGAAAUAUGAUAUUAAAUAUUAUGAAAGGGGAA-----GAAAAU-----------GCACUGCACGU-UGUGAA ((((((.....((((.......((.((((..(.(((....))))........((((((((...))))))))..)))).))-----.....)-----------)))))))))..-...... ( -21.20) >consensus GUGCAGAAAAUUGCAAAAUAUAUUGCUCUGAGAGUUGGCAAGGCAUGAGAAAUAUGAUAUUAAAUAUUAUGAAAGCGGAA_____GAAAAU___________GCACUGCACGU_UGCCAA ((((((.....(((.........((((..............)))).......((((((((...))))))))...............................)))))))))......... (-14.79 = -14.74 + -0.05)
| Location | 9,297,841 – 9,297,952 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 82.16 |
| Mean single sequence MFE | -24.85 |
| Consensus MFE | -17.43 |
| Energy contribution | -18.52 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.708161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9297841 111 + 27905053 UGCCAACUCUCGUGGCAAUAUAUUUUGCAAUUUUCUGCACAACACCUCGGGUUACCGCCAGACACCCGACGUACAUAC---CAUACAUACUUAUUGCCUGGGCUGGUCAAUACA .((((.(((....(((((((.....((((......))))....((.((((((...(....)..)))))).))......---..........))))))).))).))))....... ( -27.80) >DroSec_CAF1 69130 114 + 1 UGCCAACUCUCGUGGCAAUAUAUUUUGCAAUUUUCUGCACAACACCUCGGGUUACCGCCUGACAUCAGACGUAGAUACAUACAUACAUACUUAUUGCCUGGGCUGGUCAAUACA .((((.(((....(((((((.....((((......)))).......((((((....))))))........(((......))).........))))))).))).))))....... ( -26.10) >DroSim_CAF1 70398 114 + 1 UGCCAACUCUCGUGGCAAUAUAUUUUGCAAUUUUCUGCACAACACCUCGGGUUACCGCCUGACAUCAGACGUACAUACAUACAUACAUACUUAUUGCCUGGGCUGGUCAAUACA .((((.(((....(((((((.....((((......)))).......((((((....)))))).............................))))))).))).))))....... ( -25.30) >DroEre_CAF1 69956 102 + 1 UGCCAACUCUCGUGGCAAUAUAUUUUGCAAUUUUCUGCACAACACCUCGGGUUACCGUCGGCCAUCAGAC------------AUACAUACUUAUUGCCUGGGCUGGCCAAUACA .((((.(((....(((((((.....((((......)))).....((.(((....)))..)).........------------.........))))))).))).))))....... ( -25.90) >DroYak_CAF1 69911 102 + 1 UGCCAACUCUCGUGGCAAUAUAUUUUGCAAUUUUCUGCACAACACCUCGGGUUACCAUCGGACAUCAGAC------------AUACAUACUCAUUGCCUGGGCUGGCCCAUACA .((((.(((....((((((......((((......)))).....((..((....))...)).........------------..........)))))).))).))))....... ( -22.50) >DroAna_CAF1 68193 85 + 1 GGCCAACUCCAAGUGCAAUAUAUUUUGCAAUUUUCCGCACAACACCUCGGGUUACCAUCGGAC-----------------------AUACUUAU------GGACGGCCAAUACA ((((...((((..(((((......)))))....((((......(((...)))......)))).-----------------------.......)------))).))))...... ( -21.50) >consensus UGCCAACUCUCGUGGCAAUAUAUUUUGCAAUUUUCUGCACAACACCUCGGGUUACCGCCGGACAUCAGAC____________AUACAUACUUAUUGCCUGGGCUGGCCAAUACA .((((.(((....(((((((.....((((......)))).........((....))...................................))))))).))).))))....... (-17.43 = -18.52 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:33 2006