Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,296,408 – 9,296,505 |
Length | 97 |
Max. P | 0.914150 |
Location | 9,296,408 – 9,296,505 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 78.75 |
Mean single sequence MFE | -25.12 |
Consensus MFE | -12.95 |
Energy contribution | -14.40 |
Covariance contribution | 1.45 |
Combinations/Pair | 1.15 |
Mean z-score | -2.50 |
Structure conservation index | 0.52 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.914150 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9296408 97 - 27905053 GCCACAAAGAAAAACGCCCAUUUUUCCUGUAGGGUAAUAUAUA----UGCCC-GGCAUAUGCGAGUUUCCUUAUGUUUAUUUGCAUAAGUAGCUCAACUCGC ((((((..((((((......)))))).))).(((((.......----)))))-)))....(((((((..(((((((......)))))))......))))))) ( -28.40) >DroPse_CAF1 66007 91 - 1 ----CCA--UGAAACGCCCA-----CCAGCAUGUACAUACAUAUGUACACACUUAGGUAUGUGUGUACCCUUAUGUUUAUUUGCAUAAGUAGCUCAGCUCGC ----...--......((...-----..(((..((((((((((((.((......)).)))))))))))).(((((((......)))))))..)))..)).... ( -25.20) >DroSec_CAF1 67641 97 - 1 ----CAAAGAAAAACGCCCAUUUUUCCGGGAGGGUAAUAUAUAUGUAUGCCC-GGCAUAUGCGAGUUUCCUUAUGUUUAUUUGCAUAAGUAGCUCAACUCGC ----....((((((......))))))((((.(((((.(((....))))))))-.((....))(((((..(((((((......))))))).)))))..)))). ( -25.70) >DroSim_CAF1 68903 97 - 1 ----CAAAGAAAAACGCCCAUUUUUCCGGGAGGGUAAUAUAUAUGUAUGCCC-GGCAUAUGCGAGUUUCCUUAUGUUUAUUUGCAUAAGUAGCUCAACUCGC ----....((((((......))))))((((.(((((.(((....))))))))-.((....))(((((..(((((((......))))))).)))))..)))). ( -25.70) >DroYak_CAF1 68380 92 - 1 ----AA-AGAAAAACGCCCAUUUUUCCGGGAGGAUAAUAUAUA----UGCCC-GGCAUAUGCGAGUUUCCUUAUGUUUAUUUGCAUAAGUAGCUCAACUCGC ----..-.((((((......))))))((((.........((((----(((..-.))))))).(((((..(((((((......))))))).)))))..)))). ( -22.50) >DroPer_CAF1 69006 91 - 1 ----CCA--AGAAACGCCCA-----CCAACAUGUACAUACAUAUGUACACACUUAGGUAUGUGUGUACCCUUAUGUUUAUUUGCAUAAGUAGCUCAGCUCGC ----...--......((...-----.......((((((((((((.((......)).)))))))))))).(((((((......)))))))..))......... ( -23.20) >consensus ____CAAAGAAAAACGCCCAUUUUUCCGGGAGGGUAAUAUAUAUGUAUGCCC_GGCAUAUGCGAGUUUCCUUAUGUUUAUUUGCAUAAGUAGCUCAACUCGC ............................................((((((....))))))(((((((..(((((((......)))))))......))))))) (-12.95 = -14.40 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:32 2006