Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,294,526 – 9,294,618 |
Length | 92 |
Max. P | 0.801845 |
Location | 9,294,526 – 9,294,618 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 65.91 |
Mean single sequence MFE | -29.76 |
Consensus MFE | -12.09 |
Energy contribution | -13.87 |
Covariance contribution | 1.78 |
Combinations/Pair | 1.26 |
Mean z-score | -1.78 |
Structure conservation index | 0.41 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9294526 92 + 27905053 UGCCACCAGGAGGAGAUGC---UCUUCCUGGGUUCGCAUCGAUACACUUGAC---GCAAGUAGGUUAAAA---------------------CUUAGAAUUU-AUCUUGCCGCAAGAAGAA (((..((((((((((...)---)))))))))....)))........((((..---(((((((((((....---------------------.....)))))-).)))))..))))..... ( -30.20) >DroSec_CAF1 65793 110 + 1 UGCCACCAGGAGGAGAUGC---UCUUCCUGGGUUCGCGUCGGUACACUUGAC---GCAAGUAGGUUAAAAUCAGUCUAGAGUAAUGCAUUACAUGGAAUUU-AUCUUGGCGCAAGAA--- .((((((((((((((...)---)))))))))(((((((((((.....)))))---))..((((((.....((......)).....)).))))...))))..-....)))).......--- ( -36.60) >DroSim_CAF1 67057 110 + 1 UGCCACCAGGAGGAGAUGC---UCUUCCUGGGUUCGCAUCGGUACACUUGAC---GCAAGUAGGUUAAAAUGUGUCUAGAGUAAUGCAUUACAUGGAAUUU-AUCUUGGCGCAAGAA--- .((((((((((((((...)---)))))))))....((((...(((.((.(((---(((............)))))).)).)))))))..............-....)))).......--- ( -35.30) >DroEre_CAF1 66592 111 + 1 UGCCACCAGGAGGAGAUGC---UCAUCCUGGGUUCGCAUCGGUACACUUGAA---GCAACUACCUAAAAACCAGUCUAGAAUAAUGCAUUUCUUAGGACUUGGACUUGGUAAAAAAU--- (((((((((((.(((...)---)).))))))(((.((.((((.....)))).---)))))..........(((((((((((........))))..)))).)))...)))))......--- ( -30.10) >DroYak_CAF1 66443 116 + 1 UGCCACCAGGAGGAGAUGC---UCAUCCUGGGUUCGCCUCGGUACACUUGAGUUCGCAAGUUCGUAAAAAUCUGUCCAAAAUAAUGCAUUACUUAGAACUU-GACUUAGUAUAAAAUCUU .((..((((((.(((...)---)).))))))....))....((((..(..(((((..((((..(((..................)))...)))).))))).-.)....))))........ ( -23.67) >DroAna_CAF1 65051 99 + 1 UGUUGUCGCGAGC--UUGCCUUUCUUCCU-----UGUCUCCGUACACUUGC----AAAAUUAUGAUAUA-----UUUAUGGGG----GAGACAAAUAAUUU-AUUUUGCGUACAAUAGAU ((((((((((((.--...).........(-----((((((((((....)))----....((((((....-----.)))))).)----))))))).......-...))))).))))))... ( -22.70) >consensus UGCCACCAGGAGGAGAUGC___UCUUCCUGGGUUCGCAUCGGUACACUUGAC___GCAAGUAGGUUAAAAUC_GUCUAGAGUAAUGCAUUACAUAGAAUUU_AUCUUGGCGCAAAAA___ ((((((((((((((........)))))))))..............(((((......))))).............................................)))))......... (-12.09 = -13.87 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:31 2006