Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,293,876 – 9,293,967 |
Length | 91 |
Max. P | 0.582662 |
Location | 9,293,876 – 9,293,967 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 81.61 |
Mean single sequence MFE | -21.32 |
Consensus MFE | -13.96 |
Energy contribution | -14.28 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -1.70 |
Structure conservation index | 0.65 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9293876 91 - 27905053 GAUAAAA--AAAGGGAAAAGCUGGGAAAAAUCCAGAGGAGAU--------GGAGGGGGGAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA .......--..(((......((((((....((((.......)--------)))........)))))).)))((((...((....)).)))).......... ( -19.20) >DroSec_CAF1 65136 99 - 1 GAUAAAA-AAAAGGGAAAAGCUGGGAA-AAUCCAGGGGAGUCGGGGUAUCGGCGGGGGGGGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA .......-............((((...-...)))).((.(((((.((((((.((((.((....))...)))).))))))....))))).)).......... ( -32.50) >DroSim_CAF1 66401 100 - 1 GAUAAAAAAAAAGGGAAAAGCUGGGAA-AAUCCAGGGGAGGAGGGGUAACGGCGGGGGGAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA ....................((((...-...))))((.(...((.(((.((.((((.((....))...)))).)).)))....))..).)).......... ( -21.60) >DroEre_CAF1 65960 80 - 1 GAUAAA---AAAGGGAAAACCUGGGA--AAUCCGGG----------------GGGGUGAAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA ......---...........((((((--.((((...----------------.))))....))))))((.(((((...((....)).))))).))...... ( -19.90) >DroYak_CAF1 65793 86 - 1 GAUAAAA--AAAGGGAAAAACUGGAA--AAUUCGGGGG-----------CGGGGGGAGUAGUACUAGACCUGACGAUGCGAAACCGAUGCCAAGUGUAAUA .......--..........(((((..--...((((...-----------((((...((.....))...)))).((...))...))))..)).)))...... ( -13.40) >consensus GAUAAAA__AAAGGGAAAAGCUGGGAA_AAUCCAGGGGAG_________CGGCGGGGGGAGUCCUAGACCUGGCGAUGCGAAACCGAUGCCAAGUGUAAUA ....................((((((....(((.....................)))....))))))((.(((((...((....)).))))).))...... (-13.96 = -14.28 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:30 2006