Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,293,177 – 9,293,267 |
Length | 90 |
Max. P | 0.532017 |
Location | 9,293,177 – 9,293,267 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 88.39 |
Mean single sequence MFE | -22.32 |
Consensus MFE | -18.39 |
Energy contribution | -18.33 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.19 |
Mean z-score | -1.74 |
Structure conservation index | 0.82 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532017 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9293177 90 + 27905053 UUACAAGUUCUCACGAACAC--UCCACUGAUUCGUUGAUGUGUGCUCACUU------AGUUGAGUGAAGAAUUUCAAUUAAUUCAAUUGGAGCGGAUC ......((((....)))).(--((((.(((...(((((.((...(((((((------....))))).)).)).)))))....)))..)))))...... ( -20.00) >DroSec_CAF1 64429 90 + 1 UUACAAGUUCUCACGAACAC--UCCGCUGAUUCGUUGCUCUGUGCUCACUU------AGUUGAGUGAAGAAUUUCAAUUAAUUCAAUUGGAGUGGAUC ......((((....))))..--(((((((((((.(..(((...(((.....------))).)))..).)))))((((((.....)))))))))))).. ( -22.60) >DroSim_CAF1 65692 90 + 1 UUACAAGUUCUCACGAACAC--UCCGCUGAUUCGUUUCUCUGUGCUCACUU------AGUUGAGUGAAGAAUUUCAAUUAAUUCAAUUGGAGCGGAUC ......((((....))))..--......((((((((((.......((((((------....)))))).(((((......)))))....)))))))))) ( -22.40) >DroEre_CAF1 65265 87 + 1 UUACAAGUUCUCACGAACAC--UC---UGAUUCGUUUCUGUGUGCUCACUU------AGUUGAGUGAAGAAUUUCAAUUAAUUCAAUUGGAGCGGAUC ......((((....))))..--..---.((((((((((.......((((((------....)))))).(((((......)))))....)))))))))) ( -22.40) >DroYak_CAF1 65112 87 + 1 UUACAAGUUCUCACGAACAC--UC---UGAUUCGUUUCUGUGUGCUCACUU------AGUUGAGUGAAGAAUUUCAAUUAAUUCAAUUGGAGCGGAUC ......((((....))))..--..---.((((((((((.......((((((------....)))))).(((((......)))))....)))))))))) ( -22.40) >DroAna_CAF1 63655 98 + 1 AUACAAGUUCUCAUGAGCCAGGCACACAGAUUCGUUUGUGAGCGCUCACUUAUUGUUAGUUGAGCGAAGAAUUUCAAUUAAUUCAAUUGAAGUGGAUC ......((((....))))...((.((((((....)))))).))(((((.(((....))).))))).....(((((((((.....)))))))))..... ( -24.10) >consensus UUACAAGUUCUCACGAACAC__UCC_CUGAUUCGUUUCUGUGUGCUCACUU______AGUUGAGUGAAGAAUUUCAAUUAAUUCAAUUGGAGCGGAUC ......((((....))))..........((((((((((....((((((((.......)).))))))..(((((......)))))....)))))))))) (-18.39 = -18.33 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:29 2006