Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,270,460 – 9,270,550 |
Length | 90 |
Max. P | 0.996781 |
Location | 9,270,460 – 9,270,550 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 74.39 |
Mean single sequence MFE | -22.92 |
Consensus MFE | -7.48 |
Energy contribution | -8.78 |
Covariance contribution | 1.30 |
Combinations/Pair | 1.00 |
Mean z-score | -2.61 |
Structure conservation index | 0.33 |
SVM decision value | 2.75 |
SVM RNA-class probability | 0.996781 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9270460 90 + 27905053 GUACUUAGAUGCAGGUA----------UUUGCCUUUGCAUCUGUAAAUACACAUGUGAGUUUCUGUAUC------------UGUGUAUGUUACUGCCUCUGUUUCUGUUUUU ......((((((((((.----------...)))..)))))))(((((((((((.(((........))).------------))))))).))))................... ( -20.10) >DroSec_CAF1 41543 90 + 1 GUACUUAGAUGCAGGUA----------UUUGUCUUUGCAUCUGUAAAUACACAUGUGAGUAUCUGUAAC------------UGUGUAUGUUACUGCCUCUGUUUCUGUUUUU ((((.(((.((((((((----------(((......((((.(((....))).))))))))))))))).)------------)).))))........................ ( -19.00) >DroSim_CAF1 42722 78 + 1 GUACUUAGAUGCAGGUA----------UUUGCCUUUGCAUCUGUAAAUACACAAGUGAGUAUCUGUAUC------------------------UGCCUCUGUUUCUGUUUUU .....((((((((((((----------((..(.(((((....))))).......)..))))))))))))------------------------))................. ( -20.10) >DroEre_CAF1 42468 102 + 1 GUACUUAGAUGCAGGUA----------UUUGCCUUCGCAUCUGUAAAUACACAUGUGAGUAUCUGUAUCUGUAUCUGUAUCUGUGUAUGUUACUGCCUCUGUUUCUGUUUUU ((((.((((((((((((----------(.(((.(((((((.(((....))).))))))).....)))...))))))))))))).))))........................ ( -27.60) >DroAna_CAF1 41351 90 + 1 GCACUUGGAUGCAGGUACGGGUAAGCAUUUGCAUUUGCUUGGGUAUAU----------GUAUCUGUAGC------------UGAAAAUGUAAAUGUAUCUGUUUCUGUUUUG .......((.(((((.((((((..(((((((((((((((((((((...----------.)))))).)))------------...)))))))))))))))))).))))).)). ( -27.80) >consensus GUACUUAGAUGCAGGUA__________UUUGCCUUUGCAUCUGUAAAUACACAUGUGAGUAUCUGUAUC____________UGUGUAUGUUACUGCCUCUGUUUCUGUUUUU .......((((((((((................(((((....)))))(((....)))..))))))))))........................................... ( -7.48 = -8.78 + 1.30)
Location | 9,270,460 – 9,270,550 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 74.39 |
Mean single sequence MFE | -15.18 |
Consensus MFE | -6.31 |
Energy contribution | -7.39 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.42 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647587 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9270460 90 - 27905053 AAAAACAGAAACAGAGGCAGUAACAUACACA------------GAUACAGAAACUCACAUGUGUAUUUACAGAUGCAAAGGCAAA----------UACCUGCAUCUAAGUAC ................((.((((.(((((((------------................)))))))))))(((((((..((....----------..)))))))))..)).. ( -18.29) >DroSec_CAF1 41543 90 - 1 AAAAACAGAAACAGAGGCAGUAACAUACACA------------GUUACAGAUACUCACAUGUGUAUUUACAGAUGCAAAGACAAA----------UACCUGCAUCUAAGUAC .............(((.(.(((((.......------------))))).)...)))......((((((..(((((((........----------....))))))))))))) ( -16.60) >DroSim_CAF1 42722 78 - 1 AAAAACAGAAACAGAGGCA------------------------GAUACAGAUACUCACUUGUGUAUUUACAGAUGCAAAGGCAAA----------UACCUGCAUCUAAGUAC ................(((------------------------((((((.(........).)))))))..(((((((..((....----------..)))))))))..)).. ( -14.80) >DroEre_CAF1 42468 102 - 1 AAAAACAGAAACAGAGGCAGUAACAUACACAGAUACAGAUACAGAUACAGAUACUCACAUGUGUAUUUACAGAUGCGAAGGCAAA----------UACCUGCAUCUAAGUAC ............(((.((((......................(((((((.((......)).))))))).....(((....)))..----------...)))).)))...... ( -17.90) >DroAna_CAF1 41351 90 - 1 CAAAACAGAAACAGAUACAUUUACAUUUUCA------------GCUACAGAUAC----------AUAUACCCAAGCAAAUGCAAAUGCUUACCCGUACCUGCAUCCAAGUGC .................(((((.........------------(((........----------.........)))..(((((..(((......)))..)))))..))))). ( -8.33) >consensus AAAAACAGAAACAGAGGCAGUAACAUACACA____________GAUACAGAUACUCACAUGUGUAUUUACAGAUGCAAAGGCAAA__________UACCUGCAUCUAAGUAC .............................................(((((((((........))))))..(((((((......................)))))))..))). ( -6.31 = -7.39 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:25 2006