Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,242,166 – 9,242,266 |
Length | 100 |
Max. P | 0.899897 |
Location | 9,242,166 – 9,242,266 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.20 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -27.88 |
Energy contribution | -27.56 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.92 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9242166 100 - 27905053 GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUUUUCAAUUUGGGGCACACGGGCCCCGAAAAUUCAAAUCGUUCGGCAUACU .......((...((((((((...))))))))...((((.......(((((((((.....(((((......))))))))))))))....)))).))..... ( -32.00) >DroSec_CAF1 13097 100 - 1 GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUUUUCAAUUUGGGGCACCCGGGCCCCGAAAAUUCAAAUCGUUCGGCAUACU .......((...((((((((...))))))))...((((.......(((((((((.....(((((......))))))))))))))....)))).))..... ( -32.00) >DroSim_CAF1 13144 100 - 1 GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUAUUCAAUUUGGGCCACCCGGGCCCCAAAAAUUCAAAUCGUUCGGCAUACU .......((...((((((((...))))))))...((((..((((((((....)))....(((((.....))))).......)))))..)))).))..... ( -27.80) >DroEre_CAF1 13724 100 - 1 GAUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGGUUUUCAAUUUGGGGCACCCGGGCCCCGAAAAUUCAAAUCGUUUGGUAUACU (((((((.(((.((((((((...))))))))......(.....)))).))).....((((((((......))))))))......))))............ ( -28.90) >DroYak_CAF1 13096 100 - 1 GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGGUUUUCAAUUUGGGGCACCCGUGCCCCAAAAAUUCAAAUCGGUUGGUAUACU ..(((((.....((((((((...)))))))).((((((..........))))))..(((((((((....)))))))))...........)))))...... ( -31.00) >consensus GGUUAGCGCACAGUCGACGAAAAUUGUCGGCAGAGAACAUUUUGGUGGAUUUUCAAUUUGGGGCACCCGGGCCCCGAAAAUUCAAAUCGUUCGGCAUACU .......((...((((((((...))))))))...((((..((((((((....))).((((((((......))))))))...)))))..)))).))..... (-27.88 = -27.56 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:19 2006