Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,241,353 – 9,241,446 |
Length | 93 |
Max. P | 0.728306 |
Location | 9,241,353 – 9,241,446 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.75 |
Mean single sequence MFE | -18.97 |
Consensus MFE | -12.32 |
Energy contribution | -13.92 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.05 |
Mean z-score | -2.43 |
Structure conservation index | 0.65 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728306 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9241353 93 - 27905053 UGUUUACCUUAAAUUCAGCCGCAUCAUCAUGCAGUACAAUGGACUC--UCCAUUGACAAAAACAGGCACUGAUAUGCUGAUAAAAAGAC-ACAAAA .......(((....(((((.((((....)))).((.((((((....--.))))))))..................)))))....)))..-...... ( -19.40) >DroSec_CAF1 12282 93 - 1 UGUUUACCUUAAAUUCCGCCGCAUCACCAUGCGGUACAAUGGACUC--UCCAUUGACAAAAACAGCCACUGAUAUGCUGAUAAAAAUAC-ACAAAA .................(((((((....))))))).((((((....--.)))))).......((((.........))))..........-...... ( -21.00) >DroSim_CAF1 12108 93 - 1 UGUUUACCUUAAAUUCCGCCGCAUCACCAUGCGGUACAAUGGACUC--UCCAUUGACAAAAACAGCCAAUGAUAUGCUGAUAAAAAUAC-ACAAAA .................(((((((....))))))).((((((....--.)))))).......((((.........))))..........-...... ( -21.00) >DroEre_CAF1 12917 92 - 1 UGUUUACCUUAAAUUCCGACGCAUCACCAUGCGGUACAAUGGACUC--UCCAUUCACAAAAACAGCCGCUGAUAUGCUGAUACAAACGC--CGAAA .((((..............(((((....)))))(((.(((((....--.)))))........((((.........)))).)))))))..--..... ( -15.20) >DroYak_CAF1 12257 92 - 1 UGUUUACCUUAAAUUCCGCCGCAUCACCAUGCGGUACAAUGGACUC--UCCAUUGACAAAAACAGGCGCUGAUAUGCUGAUACAAAUGC--CGAAA (((((............(((((((....))))))).((((((....--.))))))....)))))((((.(..(((....)))..).)))--).... ( -24.00) >DroAna_CAF1 12298 78 - 1 CAUAUACCUUAAAUUCCUG----------AGCAGUACAAUGGACUCUCUCCAUUGACAAAAACGGUCGCAGCUAU--------AAAGGCAACAAAA ...............(((.----------(((.((.(((((((.....)))))))))......(....).)))..--------..)))........ ( -13.20) >consensus UGUUUACCUUAAAUUCCGCCGCAUCACCAUGCGGUACAAUGGACUC__UCCAUUGACAAAAACAGCCACUGAUAUGCUGAUAAAAAUAC_ACAAAA (((((............(((((((....))))))).(((((((.....)))))))....)))))................................ (-12.32 = -13.92 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006