Locus 341

Sequence ID 3R_DroMel_CAF1
Location 1,312,123 – 1,312,216
Length 93
Max. P 0.584514
window566

overview

Window 6

Location 1,312,123 – 1,312,216
Length 93
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 81.56
Mean single sequence MFE -23.54
Consensus MFE -16.60
Energy contribution -16.85
Covariance contribution 0.25
Combinations/Pair 1.30
Mean z-score -1.40
Structure conservation index 0.71
SVM decision value 0.10
SVM RNA-class probability 0.584514
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 1312123 93 + 27905053
AGCCACCACCGCCGCCUCCAUUUGCAUUCAAUCCUACGCUUUUGCAACAGGGACCACCGCAGAUGCAGCUGCCAGCUGCAUUCUUCCAC---GGCC
..........((((.....((((((............((....))....((.....))))))))(((((.....))))).........)---))). ( -25.50)
>DroSim_CAF1 770 93 + 1
AGCCACCACCGCCGCCUCCAUUUGCCUUCAAUCCUACGCUUUUGCAACAGGGACCACCGCAAAUGCAGCUGCCGGCUGCAUUCUUUCAC---GGCC
..........((((.....((((((......((((..((....))...))))......))))))(((((.....))))).........)---))). ( -24.60)
>DroEre_CAF1 775 90 + 1
AGCCACCACCGCCGCCGCCGUUU---UUCAAUCCUACGCUUUUGCAACAGGGACCACCGCAGAUGCAGCUGCCAGCUGCAUUCUUCCAC---GGCC
..........((((..((.....---...........((....))....((.....)))).((((((((.....))))))))......)---))). ( -23.70)
>DroWil_CAF1 3786 93 + 1
CU---CCGCCACCGCCACCAUUUGCCUUCAAUCCCACACUUUUGCCUCAGGGACCACCGCAAAUGUCGUUGCCAGCUGCCUUCUUUCAUGCUGGCC
..---.............(((((((......((((..............)))).....))))))).....((((((((........)).)))))). ( -21.64)
>DroYak_CAF1 770 93 + 1
AGCCACCACCGCCGCCGCCGUUUGCCUUCAAUACUACGCUUCUGCAACAGGGACCACCGCAGAUGCAGCUCCCAGCUGCCUUCUUUCAC---GGCC
.............((((..((((((............((....))....((.....))))))))(((((.....))))).........)---))). ( -24.00)
>DroAna_CAF1 731 90 + 1
AACCACCGCCGCCGCCUCCGUUUGCUUUUAACCCCGCUCUGUUGCCGCAGGGGCCACCGCAAAUGCAACUUCCGG---CCUUUUUCCAU---GGCC
.......(((((((....(((((((......((((((.........)).)))).....))))))).......)))---)..........---))). ( -21.80)
>consensus
AGCCACCACCGCCGCCUCCAUUUGCCUUCAAUCCUACGCUUUUGCAACAGGGACCACCGCAAAUGCAGCUGCCAGCUGCAUUCUUCCAC___GGCC
.............(((...((((((......((((..((....))....)))).....))))))(((((.....))))).............))). (-16.60 = -16.85 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:47 2006