Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,237,224 – 9,237,323 |
Length | 99 |
Max. P | 0.628591 |
Location | 9,237,224 – 9,237,323 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.51 |
Mean single sequence MFE | -37.32 |
Consensus MFE | -27.02 |
Energy contribution | -27.42 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.38 |
Mean z-score | -1.44 |
Structure conservation index | 0.72 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9237224 99 - 27905053 UGAUUCGCAUCCUAGUUGGAGUGAUUUGUGCGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCUUGCAGGUGGCCAAGCAGUGGAAACUCC .((.((((.(((.....))))))).))((....(((((((((((((.((.(((((((........))))))).)).))))))))))....))).))... ( -39.60) >DroPse_CAF1 7936 96 - 1 UGAUCAGGAUCCUUGCCGCAGUACUUUGUGCGCUCCUCUGG---CCGGCCAGUCGGGCCCUUACUCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC ......(((..(((.((((.((((...))))(((....(((---(((.((.(.((((((.........))))))).))))))))))).))))))).))) ( -36.00) >DroEre_CAF1 9009 99 - 1 UGAUUCGCAUCCUAGUUGGAGUGAUCUGUGUGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCUUGCAGGUGGCCAAGCAGUGGAAACUCC .(((.(((.(((.....)))))))))...((..(((((((((((((.((.(((((((........))))))).)).))))))))))....))).))... ( -40.60) >DroYak_CAF1 8303 99 - 1 UGAUUCGCAUCCUAGUGGGAGUGAUUUGUGUGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC .((.((((.(((.....))))))).))..((..(((((((((((((.((..((((((........))))))..)).))))))))))....))).))... ( -38.80) >DroAna_CAF1 8621 99 - 1 UGCUUCGCAUCCUUGCCGGAGUUAUUUGCUUAAUCCUUUGGCCAUCUGUUAUCCAGGCUCUGGCUCCUGGCUUACAAGUGGCCAAGCAGUGGAAGCUCC .(((((.(((...(((.(((.(((......)))))).(((((((..(((...(((((........)))))...)))..))))))))))))))))))... ( -36.50) >DroPer_CAF1 10331 96 - 1 UGCUCAGGAUCCUUGCCGUAGUACUUUGUGCGCUCCUCUGG---CCGGCCAGUCGGGCCCUUACUCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC .(((.....(((((((....((((...)))).......(((---(((.((.(.((((((.........))))))).)))))))).)))).))))))... ( -32.40) >consensus UGAUUCGCAUCCUAGCCGGAGUGAUUUGUGCGGUCCUUUGGUCGCCGGUUAGCCAGGCUCUAACCCCUGGCCUGCAGGUGGCCAAGCAGUGGAAGCUCC .................(((((...((((........(((((((((.((..((((((........))))))..)).))))))))))))).....))))) (-27.02 = -27.42 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:15 2006