Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,236,075 – 9,236,183 |
Length | 108 |
Max. P | 0.557402 |
Location | 9,236,075 – 9,236,183 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 79.43 |
Mean single sequence MFE | -26.60 |
Consensus MFE | -15.80 |
Energy contribution | -16.22 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.12 |
Mean z-score | -1.59 |
Structure conservation index | 0.59 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.557402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9236075 108 + 27905053 AGCAUUUUGCCAUCUGGCAAAGGACCCGCACGCAGGACAUUCUUAUGCACGGAGAAAACUCUGUAAAAUAAAGAGAUACAAUUAGAUAUUACUAA--UUUUUGCUUU--AAA .((..((((((....))))))(....)))..((((((..(((((((..((((((....))))))...)).))))).....(((((......))))--)))))))...--... ( -23.50) >DroPse_CAF1 7085 103 + 1 AGCAUCUUUCCGUCGGGCAGUGGUCCGGCACGCAGCACAUUCUUGUGCACCGAAAAAACACUAGAAGCGAACGGUAAUGGAUAAG-----GAGAA--UCCUAGGCUU--AGA (((((((..(((((((((....))))))).(((.(((((....)))))...(......).......)))...))....)))).((-----(....--.)))..))).--... ( -30.20) >DroSec_CAF1 6990 108 + 1 AGCAUUUUGCCAUCUGGCAAAGGACCCGCACGCAGGACAUUCUUGUGCACGGAGAAAACUCUGGAAAAUAAAGAGACAAAAUUAGAUAUUACUAA--UAUUGGGUUU--AAA .....((((((....))))))(((((((((((.(((....)))))))).(((((....))))).................(((((......))))--)...))))))--... ( -28.90) >DroSim_CAF1 6791 108 + 1 AGCAUUUUGCCAUCUGGCAAAGGACCCGCACGCAGGACAUUCUUGUGCACGGAGAAAACUCUGGAAAAUAAAGAGACAAAAUUAGAUAUUACUAA--UUUUGGGUUU--AAA .....((((((....))))))(((((((((((.(((....)))))))).(((((....)))))..............((((((((......))))--))))))))))--... ( -31.60) >DroEre_CAF1 7819 112 + 1 AGCAUUUUGCCAUCUGGCAAAGGACCCGCACGCAGGACGUUCUUGUGCACGGAGAAAACUCUGGAAAAUAAAAAGACAACAUUAGCUAUUAUUACUAUUUUUGAUUCGGAAA (((.(((((((....))))))).....(((((.(((....)))))))).(((((....))))).....................)))......................... ( -22.80) >DroYak_CAF1 7156 105 + 1 AGCAUCUUGCCGUCUGGCAAAGGACCCGCACGCAGGACAUUCUUGUGCACGGAGAAAACUCUGGAAAAUAAAUGGAUAACAUAAGCUAUUGUAACUAUUUUGGAU------- (((...(((((....))))).....(((((((.(((....)))))))).(((((....)))))..........)).........)))..................------- ( -22.60) >consensus AGCAUUUUGCCAUCUGGCAAAGGACCCGCACGCAGGACAUUCUUGUGCACGGAGAAAACUCUGGAAAAUAAAGAGACAAAAUUAGAUAUUACUAA__UUUUGGGUUU__AAA ....(((((((....)))))))...(((..((((((.....))))))..)))............................................................ (-15.80 = -16.22 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:14 2006