Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,233,627 – 9,233,740 |
Length | 113 |
Max. P | 0.875948 |
Location | 9,233,627 – 9,233,740 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 93.27 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -23.28 |
Energy contribution | -24.16 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.10 |
Mean z-score | -1.75 |
Structure conservation index | 0.81 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.875948 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9233627 113 - 27905053 GUUUUGCAUAUAAGAGGCAAUAGGCCAUUCCGAUCAUAAAGCCAUAAGCACCCGAUGAUUUAUUUAUUGGGCACUAUGUGUUCAUUUAGCAUGUUUAAGAUUAUUGUGUACCA ....((((((.....(((.....))).....((((.((((......((..((((((((.....))))))))..))..(((((.....))))).)))).))))..))))))... ( -22.70) >DroSec_CAF1 4518 113 - 1 GUUUUGCAUAUAAGAGGCAAUGGGCCAUUCCGAUCAUAAAGACAUAAGCACCCGAUGUUUUAUUUAUUGGGGACUAUGUGUUCAUUUAGCAUGUUUAAGAUUAUUGUGUGCGA ...((((((((((..(((.....))).....((((.((((((((((((..(((((((.......)))))))..)).))))))(((.....))))))).)))).)))))))))) ( -30.10) >DroSim_CAF1 4315 113 - 1 GUUUUGCAUAUAAGAGGCAAUGGGCCAUUCCGAUCAUAAAGCCAUAAGCACCCGAUGAUUUAUUUAUUGGGGACUAUGUGUUCAUUUAGCAUGUUUAAGAUUAUUGUGUGCGA ...((((((((((..(((.....))).....((((.((((......((..((((((((.....))))))))..))..(((((.....))))).)))).)))).)))))))))) ( -30.20) >DroEre_CAF1 4589 112 - 1 GUUUUGCAUAUAGAAGGCAAUAGGCCAUUCUGAUCAUAAAGCCAUAAGCACCCAAUGAUUUAUUUAUUGG-GAAUAUGUGUUCAUUUAGCAUGUUUAAGAUUAUUGUGUGCGA ...(((((((((((((((.....))).)))(((((.....((.....)).((((((((.....)))))))-)(((((((.........)))))))...))))).))))))))) ( -31.20) >DroYak_CAF1 4641 113 - 1 GUUUUGCAUUUAAGAGGCAAUAGGCCAUUCUGAUCAAAAAGCCACAAGCACCCAAUGAUUUAUUUAUUGGGGAAUAUGUGUUCAUUUAGCAUGCUUAAGAUUACUGUGUGCGA ...((((((...((.(((.....)))....(((((...((((.....((.((((((((.....))))))))((((....)))).....))..))))..)))))))..)))))) ( -28.80) >consensus GUUUUGCAUAUAAGAGGCAAUAGGCCAUUCCGAUCAUAAAGCCAUAAGCACCCGAUGAUUUAUUUAUUGGGGACUAUGUGUUCAUUUAGCAUGUUUAAGAUUAUUGUGUGCGA ...((((((((((..(((.....)))..................(((((.((((((((.....))))))))......(((((.....))))))))))......)))))))))) (-23.28 = -24.16 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:13 2006