Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,230,429 – 9,230,528 |
Length | 99 |
Max. P | 0.531772 |
Location | 9,230,429 – 9,230,528 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 83.48 |
Mean single sequence MFE | -33.93 |
Consensus MFE | -23.83 |
Energy contribution | -24.97 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.15 |
Mean z-score | -1.72 |
Structure conservation index | 0.70 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.531772 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9230429 99 + 27905053 CAAACUGAGGUUCGUCCACUGAUGCAGGGUGUGCAGCUCCUUGAGGACCAAUGCCUGGCCCUGGACUGCACAAAAUAAUGCGAGCAGGACGACCAACAU-- ........(((.(((((..((.((((...(((((((.(((...(((.(((.....))).)))))))))))))......))))..)))))))))).....-- ( -36.20) >DroSec_CAF1 1263 99 + 1 CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAAUGGCUGGCUCUGGACUGCACAAAAUAAUGCAAGCAGGAUGACCAACAU-- ........(((.(((((.....((((...(((((((.(((..(((..(((.....)))))).))))))))))......))))....)))))))).....-- ( -35.40) >DroSim_CAF1 1062 99 + 1 CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAGUGGCUGGCUCUGGACUGCACAAAAUAAUGCAAGCAGGAUGACCAACAU-- ........(((.(((((.....((((...(((((((.(((..(((..((((...))))))).))))))))))......))))....)))))))).....-- ( -36.90) >DroEre_CAF1 1356 99 + 1 CAGACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAACCGCUGGCCCUGGACUGCACAGAAUAGCGCGAAGAGGACGACCAACAU-- ........(((.(((((.((.((((....(((((((.(((...(((.(((.....))).))))))))))))).....))))..)).)))))))).....-- ( -39.80) >DroYak_CAF1 1337 99 + 1 CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAACUGCUGGCCCCGGACUGCACAGAAUAACGCGAGGAGGACGACCCACAU-- ........((.((((((.((.(((.....(((((((.(((..(.((.(((.....)))))).))))))))))......))).))..)))))).))....-- ( -37.80) >DroPer_CAF1 3600 98 + 1 CGAACUAAUAUUCGUCCACUGGUGUAGUGUAUGGAGCUCUUUCACAAACAAUUUCUGGGACUGCACCGCACAGAAAACUCCCAGCAGGAUCA---AAAUAC ((((......))))(((...((((((((...(((((................)))))..))))))))((...((....))...)).)))...---...... ( -17.49) >consensus CAAACUGAGGUUCGUCCACUGGUGCAGGGUGUGCAGCUCCUUGAGGACCAAUGGCUGGCCCUGGACUGCACAAAAUAAUGCGAGCAGGACGACCAACAU__ ........(((.(((((.(((...)))..(((((((.(((...(((.(((.....))).)))))))))))))..............))))))))....... (-23.83 = -24.97 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:12 2006