Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,223,792 – 9,223,912 |
Length | 120 |
Max. P | 0.746554 |
Location | 9,223,792 – 9,223,912 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.25 |
Mean single sequence MFE | -45.06 |
Consensus MFE | -37.54 |
Energy contribution | -38.62 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.47 |
Structure conservation index | 0.83 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9223792 120 - 27905053 UCCUGUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCGGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCAGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCAGGAGC ((((((((((..((.((((........((((....)))).(..((..((((.((.((....(((((.((....)).))))).)).)).))))..))..).)))).)).)))))))))).. ( -47.70) >DroSec_CAF1 66153 120 - 1 UCCUUUUUACUUUUUCUUCAAGAAAGAGCUGACGACAGCCGGCGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUUGUCACAGGAGCAGUGUAAGCAGGAGC ((((.(((((((((((.....))))))((((.(..(.(((((.(((((.(((.((.(......).)).).)).))))).)))))((((.....))))...)..)))))))))).)))).. ( -43.30) >DroSim_CAF1 58867 120 - 1 UCCUUUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCCGGCGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCAGGAGC ((((.(((((..((.((((.((......))(((.(((((((.(((..(....)..))....(((((.((....)).)))))).))))...))).)))...)))).)).))))).)))).. ( -40.40) >DroEre_CAF1 69203 120 - 1 UCCAGAUCACUUCCUCUUCAGGAUGGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUAGGAGCAGCAAAGGCAGUUCCUGCGGCAUAUGUGCUCACAGGAGCGGCGUAAGCAGGAGC (((..((((((.(((((((.....))))...(((.((((....)))))))))).)))))).)))...((....)).((((((((....(((((((((....)))).))))).)))))))) ( -45.10) >DroYak_CAF1 59147 120 - 1 UCCUGAUCACUUCUUCUUCAGGAUGGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUGGGAGCACCAAAGGCAGCUCCCGCGGCAUAUGUGGUCACAGGAGCGGCGUAAGCAGGAGC (((((....((((.((.....)).)))).((((.((((((((((((((.(...(((((.......))))).).))))))))...)))...))).)))))))))((.((....))....)) ( -48.80) >consensus UCCUGUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCAGGAGC ((((((((((..((.((((........(((.(((.((((....))))))).))).(((((.(((((.((....)).))))).(((.....))).))))).)))).)).)))))))))).. (-37.54 = -38.62 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:11 2006