| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,222,519 – 9,222,741 |
| Length | 222 |
| Max. P | 0.666743 |
| Location | 9,222,519 – 9,222,639 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.83 |
| Mean single sequence MFE | -43.18 |
| Consensus MFE | -36.92 |
| Energy contribution | -38.36 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666743 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9222519 120 + 27905053 AGCAGUCCUGUUUACUUCUUCUUCAAGAAAGAGCUGACGACAGCGGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCA .((..((((((...((..(((.....)))..))..(((.(((((.((((((((.(((.((.(......).)).).)).)))))))).))......))).))))))))))).......... ( -39.90) >DroSec_CAF1 64882 120 + 1 AGGAGUCCUGUUUACUUCUUCUUUAAGAAGGAGCUGACGACAGCGGGAGCUGCGAAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCAGUGUAAGCA .....((((((...(((((((.....)))))))..(((.(((((.((((((((....(((.((.......)).)))..)))))))).))......))).)))))))))((.......)). ( -43.40) >DroSim_CAF1 57356 120 + 1 AGGAGUCCUGUUUACUUCUUCUUCAAGAAGGAGCUGACGACAGCGGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCGGUUCCGGCGGCAUAUGUGGUCACAGGAGCGGCGUAAGCA .....((((((...(((((((.....)))))))..(((.(((((.((((((((.(((.((.(......).)).).)).)))))))).))......))).)))))))))...((....)). ( -46.10) >DroEre_CAF1 67955 120 + 1 AGGAGUCCAGAUCACUUCUUCUUCAGGAUGGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUAGGAGCAGCAAAGGCAGUUCCUGCGGCAUAUGUGCUCACAGGAGCGGCGUAAGCA .(..(((.((.((...(((......)))..)).)))))..).(((...(((((....((....))....)))))...))).(((((((.((((....))).).))))))).((....)). ( -41.80) >DroYak_CAF1 57859 120 + 1 AGGAGUCCUGAUCACUUCUUCUUCAGGAUGGAGCUGACGACAGCCGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAAAGGCAGUUCCUGCGGCAUAUGUGGUCACAGGAGCGGCGUAAGCA ....(((((((...........)))))))...(((.(((.(.(((...(((((................)))))...))).(((((((.(((.......))).)))))))).))).))). ( -44.69) >consensus AGGAGUCCUGUUUACUUCUUCUUCAAGAAGGAGCUGACGACAGCGGGAGCUGCGUAGGUGGUGAUGGGAGCAGCAUAGGCAGUUCCGGCGGCAUAUGUGGUCACAGGAGCGGCGUAAGCA .....(((((....(((((((.....))))))).((((.(((((.((((((((.((.((.((.......)).)).)).)))))))).))......))).)))))))))((.......)). (-36.92 = -38.36 + 1.44)
| Location | 9,222,639 – 9,222,741 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.00 |
| Mean single sequence MFE | -25.60 |
| Consensus MFE | -23.43 |
| Energy contribution | -23.43 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.95 |
| Structure conservation index | 0.92 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.554462 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9222639 102 - 27905053 UUCCGCAGCUGCUCCCUUGGCCUACUCCGCUCCGGUGGCCACCUACUCCGCACCAGCAUACUCCACCUACGCCGCUGCCGCCGUUCCCG------------------CCUUAAGUGCUCC ....(((((.((.....(((((....(((...))).)))))........((....)).............)).)))))..........(------------------((....).))... ( -24.20) >DroSec_CAF1 65002 120 - 1 CUCCGCAGCUGCUUCCUUGGCCUACUCCGCUCCGGUGGCCACCUACUCCGCUCCAGCCUACUCCACAUAUGCCGCUGCCACCGUUCCCGCAUACACAGCCUACUCCGCGUUAAGUGCUCC ....(((((.((.....(((((....(((...))).)))))........((....)).............)).)))))..........((((.....((.......)).....))))... ( -27.40) >DroSim_CAF1 57476 120 - 1 CUCCGCAGCUGCUCCCUUGGCCUACUCCGCUCCGGUGGCCACCUACUCCGCUCCAGCAUACUCCACCUACGCCGCUGCCGCCGUUCCCGCCUACACCGCCUACUCCGCCUUAAGUGCUCC ....(((((.((.....(((((....(((...))).)))))........((....)).............)).)))))..........((((.....((.......))....)).))... ( -25.20) >consensus CUCCGCAGCUGCUCCCUUGGCCUACUCCGCUCCGGUGGCCACCUACUCCGCUCCAGCAUACUCCACCUACGCCGCUGCCGCCGUUCCCGC_UACAC_GCCUACUCCGCCUUAAGUGCUCC ....(((((.((.....(((((....(((...))).)))))........((....)).............)).))))).......................................... (-23.43 = -23.43 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:10 2006