Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,221,392 – 9,221,510 |
Length | 118 |
Max. P | 0.767882 |
Location | 9,221,392 – 9,221,510 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 90.93 |
Mean single sequence MFE | -39.50 |
Consensus MFE | -32.74 |
Energy contribution | -32.46 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.24 |
Mean z-score | -1.51 |
Structure conservation index | 0.83 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9221392 118 - 27905053 GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGCGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUUGGGCGACAAGGAGUGGUAGAUGGUGGUCAAAGU (((((.(((..(((((.........)))))((((((....)(((.((((..((((((((((((....))).))))))).))..)))).)))....)))))...)).).)))))..... ( -39.80) >DroSec_CAF1 63692 118 - 1 GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUCGCGCACCUAAGAGUGGUAGAUGGAGGUCAAAGU .((((.(((..(((...((((..(((....((((((((.(((((....(((((((....)))))))))))))))))))))))..))))..)))..))))))).(((....)))..... ( -36.80) >DroSim_CAF1 56168 118 - 1 GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUCGCGCACCUAAGAGUGGUAGAUGGAGGUCAAAGU .((((.(((..(((...((((..(((....((((((((.(((((....(((((((....)))))))))))))))))))))))..))))..)))..))))))).(((....)))..... ( -36.80) >DroEre_CAF1 66708 118 - 1 GACCAGCUCAAAGGGAAUGUGUUAGUCCUCCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCCUAAUUGGGUUCUGAGCGGCUUUUGGGCAGCUGAGAGUGGUAGAUGGAGGUCAAAGG ((((.(((((((((...((.((((((((.((....)))))).)))))).....((((((((((....))).)))))))..))))))))).(((......))).......))))..... ( -41.20) >DroYak_CAF1 56577 118 - 1 GGCCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGAUUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUAAGCGGCUUUUGGCCAGCCGAGAGUGGUAAGAGGAGGUCGGAGG ((((..(((..(((((.........)))))(((((..((...(((((((..(.((((((((((....))).)))))))..)..))))))).))..)))))....)))..))))..... ( -42.90) >consensus GACCAGCUCAAAGGGAAUGUGUUAGUCCUUCGCUCGGGGACUUGGCCAAUUGAGUUUAGGCUUAAUUAAGUUCUGAGCGGCUUUUGGGCACCUAAGAGUGGUAGAUGGAGGUCAAAGU ((((.((((((..((........(((((((.....)))))))...))..))))))((((((((....))).)))))((.((((((((....)))))))).)).......))))..... (-32.74 = -32.46 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:08 2006