Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,204,602 – 9,204,706 |
Length | 104 |
Max. P | 0.978595 |
Location | 9,204,602 – 9,204,706 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 87.78 |
Mean single sequence MFE | -31.06 |
Consensus MFE | -27.59 |
Energy contribution | -27.39 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.24 |
Mean z-score | -1.97 |
Structure conservation index | 0.89 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9204602 104 + 27905053 ----UCCGCAAGGGUAUAGAAUUUUCGGCAUUCUGCUUCUAAAUCUUAGUUGCUUCAAAUGCAAAUUAGCUUUGGAGAGCGGAAUAAAUAAGGGUCAAGAGAUGUGGG ----(((....)))...........(.((((((((((((((((.((...((((.......))))...)).)))))).))))))))........(((....))))).). ( -27.00) >DroSec_CAF1 40149 108 + 1 UGUAGCUGCACGGGUAUAAAAUCCUCGGCAUUCCGCUUCCAAAUCUCAGUUGGUCUAAAUGCAAAUUAGCUUUGGAGAGCGGAAUGUAUAAGGGUCAAGAGAUGUGGG ........((((........(((((..((((((((((((((((.((.((((.((......)).)))))).)))))).))))))))))...))))).......)))).. ( -33.46) >DroSim_CAF1 39053 108 + 1 UGUAGCUGCACUGGCAUAGAAUCCUCGGCAUUCCGCUUCCAAAUCUCAGUUGGUAUAAAUGCAAAUUAGCUUUGGAGAGCGGAAUGUAUAAGGGUCAAGAGAUGUGGG ..........((.((((...(((((..((((((((((((((((.((.((((.(((....))).)))))).)))))).))))))))))...)))))......)))).)) ( -35.60) >DroEre_CAF1 45816 107 + 1 UUUAGCUGCAAGGGUAUAUAAUCCACGGCAUUCUGCUUCCAAAUCUAAGUUGGCAUAAAUGCAAAUUAGCUUUGGAGAGCGGAAAGUAUAAGGGUCAAGAAAUGUGG- ....((((...((((.....)))).)))).(((((((((((((.((((....(((....)))...)))).)))))).))))))).......................- ( -29.00) >DroYak_CAF1 39239 108 + 1 UUUAGCUACAAGGGUAUAUAAUCCUCGGCAUUCUGCUUCCAAAUCUCAGUUGGCAUAAAUGCAAAUUAGCUUUGGAGAGCGGAAAGUAUAGGGGUCAAGAAAUGUGGG .....(((((............((((.((.(((((((((((((.((.((((.(((....))).)))))).)))))).))))))).))...))))........))))). ( -30.25) >consensus UGUAGCUGCAAGGGUAUAGAAUCCUCGGCAUUCUGCUUCCAAAUCUCAGUUGGUAUAAAUGCAAAUUAGCUUUGGAGAGCGGAAUGUAUAAGGGUCAAGAGAUGUGGG .....(((((..........(((((..((((((((((((((((.((.((((.((......)).)))))).)))))).))))))))))...))))).......))))). (-27.59 = -27.39 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:05 2006