Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,202,274 – 9,202,388 |
Length | 114 |
Max. P | 0.682212 |
Location | 9,202,274 – 9,202,388 |
---|---|
Length | 114 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 89.62 |
Mean single sequence MFE | -17.70 |
Consensus MFE | -12.69 |
Energy contribution | -13.00 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.06 |
Mean z-score | -1.95 |
Structure conservation index | 0.72 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.682212 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9202274 114 + 27905053 ACUAAAUAUAACUCAGACUUAACGACGCUGUUCAUUUACGCCACAGCGGUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA .......................((((.((((..((((((....(((((.(((((((.....))))))).)).))).........))))))..))))..))))........... ( -16.82) >DroSec_CAF1 37897 114 + 1 ACUAAAUACAACUCAUUUAAAACGACGCUGUUCAUUUACGCCACAGCGUUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA ......(((............((((((((((...........))))))))))(((((.....)))))...................)))((((......))))........... ( -17.20) >DroSim_CAF1 36717 114 + 1 ACUAAAUAUAACUCAUUUAUAACGACGCUGUUCAUUUACGCCACAGCGUUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA .....................((((((((((...........))))))))))(((((.....)))))...................((((.((......))))))......... ( -16.90) >DroYak_CAF1 36797 113 + 1 CCUAAUUAUAACUCAUUAAUAACAACGCUGUUUAUUUUCGCAACAGCGUUGUAGGAUUUCAAAUGAUAUUGAAGCUUAUCUUUAACGUUA-CAAACAAAUUUUACACAAAAAUA (((.((((........)))).(((((((((((.........))))))))))))))........(((..((((((.....))))))..)))-....................... ( -19.90) >consensus ACUAAAUAUAACUCAUUUAUAACGACGCUGUUCAUUUACGCCACAGCGUUGUAGUAUUUCAAAUACUAUUCCGGCUAAUCUUUAACGUAAACAAACAAAUGUUACACAAAAAUA .....................((((((((((...........))))))))))..............................((((((..........)))))).......... (-12.69 = -13.00 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:58 2006