Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,193,323 – 9,193,440 |
Length | 117 |
Max. P | 0.534550 |
Location | 9,193,323 – 9,193,440 |
---|---|
Length | 117 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 86.10 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -19.58 |
Energy contribution | -19.86 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.80 |
Structure conservation index | 0.67 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9193323 117 - 27905053 CAAAUACAUAUGUAUAUUAUUUGGAUGCCA-AUUGAUAUGAUUUCCUAUACCUAUUGCAAAUGUGAUAGAUAGGGCGGCUAAGUCGUUUCUUUUGCGAUGGGCGGCAUUUUCAGUGGG ......(((...(((((((.((((...)))-).)))))))....(((((..((((..(....)..)))))))))((.(((..(((((.......))))).))).)).......))).. ( -30.40) >DroSec_CAF1 30505 106 - 1 UAA--------GAAUAUUAUUUGGAUGCCAAAUUAGUAUGAUUUCCUAUACCUAUUGCAAAUGUGAU----AGGGCGGCUAAGUCGUAUCUCUUGCGAUGGGCGUCAUUUUCAGUGGG ...--------..(((((((((((...))))).)))))).....(((((.(((((..(....)..))----)))(((.((..((((((.....)))))))).)))........))))) ( -29.00) >DroSim_CAF1 29370 106 - 1 UAA--------GAAUGUUAUUUGGAUGCCAAAUUAGUAUGAUUUCCUAUACCUAUUGCAAAUGUAAU----AGGGCGGCUAAGUCGUAUCUUUUGCGAUGGGCGGCAUUUUCAGUGGG ...--------..((...((((((...))))))..)).......(((((.((((((((....)))))----)))((.(((..((((((.....)))))).))).)).......))))) ( -30.60) >DroEre_CAF1 35753 102 - 1 UAU--------GUAUAUUAUUUAGAUGCCAAAUUAAAAUGAUUUUCUGUACCUAUUGCAAAUGUAAA----AGGGCGGCUAAGUCGUAUCUCUUGCGAUGGGCGGCAUUUUCAG---- ...--------...........(((((((........(((((((.((((.(((.((((....)))).----)))))))..))))))).......((.....)))))))))....---- ( -24.60) >DroYak_CAF1 29120 106 - 1 UAU--------GUAUAUUAUUUGGAUGCCGAAUUAAAAGGAUUUCCUGUACCUAUUGCAAAUGUAAU----AGGGCGGCUAAGUCGUAUCUCUUUCGAUGGGCGGCAUUUUCAGUGGG ...--------.....(((((.((((((((.((..(((((((........((((((((....)))))----)))(((((...)))))))).))))..))...))))))))..))))). ( -31.50) >consensus UAA________GUAUAUUAUUUGGAUGCCAAAUUAAUAUGAUUUCCUAUACCUAUUGCAAAUGUAAU____AGGGCGGCUAAGUCGUAUCUCUUGCGAUGGGCGGCAUUUUCAGUGGG ......................((((((((((((.....)))))......((((((((((...........((((((((...))))).))).)))))))))).)))))))........ (-19.58 = -19.86 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:55 2006