Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,192,643 – 9,192,749 |
Length | 106 |
Max. P | 0.801571 |
Location | 9,192,643 – 9,192,749 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 79.72 |
Mean single sequence MFE | -26.85 |
Consensus MFE | -19.82 |
Energy contribution | -19.66 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.32 |
Mean z-score | -1.71 |
Structure conservation index | 0.74 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.801571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9192643 106 + 27905053 AGUGUUGUUAAGCGCAGCAAGACCACUGUUGUGGGCUAACAGAAUGUUAUACGCGUGCCAAGGCAA-----ACAAAAAUACAUGGUCGUUUUCAAAAAGGGGACAAAUAUU ..((((((.....)))))).((((.((((((.....)))))).((((........(((....))).-----........))))))))(((..(.....)..)))....... ( -26.73) >DroSec_CAF1 29829 104 + 1 AGUGCUGUAAAGCGCAGCAAGACCUCUGUUAUGUGCUAACAGAAUGCUAUCCGCGUGCCAAGGCAA-----ACAAAAAUACAUGGUCGUAUUCAA--AGGGGACAAAUAUU ..((((((.....)))))).(((((((((((.....)))))))((((.....))))((....))..-----............))))........--.(....)....... ( -26.10) >DroSim_CAF1 28685 104 + 1 AGUGCUGUAAAGCGCAGCAAGACCACUGUUAUGUACUAGCAGAAUGCUAUCAGCGUGCCAAGGCAA-----ACAAAAAUACAUGGUCGUAUUCAA--AGGGGACAAAUAUU ..((((((.....)))))).(((((((((((.....)))))).((((.....))))((....))..-----...........)))))........--.(....)....... ( -26.40) >DroEre_CAF1 35088 108 + 1 AGUGCUGUUAAGCGCAGCAAGACCGAUGUUGUGAGUUUACAGAAUGUUAUACACGUGUAACGACAUAAAUAAUAUAUAUCCAUGGUCGUUUCCGA--AGGGGAUAAAUAU- ..((((((.....)))))).((((((((((((..(((((.....(((((((....)))))))...))))).))).)))))...))))..((((..--..)))).......- ( -25.50) >DroYak_CAF1 28434 107 + 1 AGUGCUGUUAAGCGCAGCAAUACCGCUGUUGUGCGUUAAC-GAAUGUUAUCCGAGUGCAACGGCAUUAAC-ACAUAUAUCAAUGUUCUUUUUCGA--AGGGAAAAAAUAUA ..((((((.....)))))).....(((((((..(..((((-....)))).....)..)))))))......-..........(((((.((((((..--..))))))))))). ( -29.50) >consensus AGUGCUGUUAAGCGCAGCAAGACCACUGUUGUGUGCUAACAGAAUGUUAUCCGCGUGCCAAGGCAA_____ACAAAAAUACAUGGUCGUUUUCAA__AGGGGACAAAUAUU ..((((((.....)))))).((((.((((((.....)))))).............(((....)))..................))))((((((.....))))))....... (-19.82 = -19.66 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:54 2006