Locus 3394

Sequence ID 3R_DroMel_CAF1
Location 9,180,915 – 9,181,033
Length 118
Max. P 0.645809
window5447

overview

Window 7

Location 9,180,915 – 9,181,033
Length 118
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 80.37
Mean single sequence MFE -25.72
Consensus MFE -15.15
Energy contribution -16.14
Covariance contribution 0.99
Combinations/Pair 1.21
Mean z-score -1.87
Structure conservation index 0.59
SVM decision value 0.23
SVM RNA-class probability 0.645809
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9180915 118 - 27905053
UAUAGUGUCCAGCAAAAGGUGAGAAUCCUCAGCCAAUCGCGUUAAUUGGUCAAGUAGCCAACUUGCGCCCAUAAUUAGAAAAAGUCGCACGAAUUGUAUGUAACUAAAAUUAAGAUAU
..((((.....((((..((((((....)))).))....((((...(((((......)))))...)))).........................)))).....))))............ ( -21.30)
>DroSec_CAF1 18149 118 - 1
UAUAGUGUCCAGCAAAAGGUGAGAAUCCUCAGCCAAUCGCGUAAGUUGGUCAAGUAGCCAACUUGCGCCCAUAAUCAGAAAAAGUCGCACAAACUGUAUGUAACUAAAAUUAAUAUAU
((((((.....((....((((((....)))).))....((((((((((((......))))))))))))..................))....)))))).................... ( -31.70)
>DroSim_CAF1 17171 118 - 1
UAUAGUGUCCAGCAAAAGGUGAGAAUCCUCAGCCAAUCGCGUAAGUUGGUCAAGUAGCCAACUUGCGCCCAUAAUCAGAAAAAGUCGCACAAACUGUAUGUAACUAAAAUUAAUAUAU
((((((.....((....((((((....)))).))....((((((((((((......))))))))))))..................))....)))))).................... ( -31.70)
>DroEre_CAF1 23152 109 - 1
UAUACUGCUUUUCAUGA------AAUCC---ACUAUUUCCGUAAGUUGGUAAAUUAUCCAAUUCGCGCCCAUGAUCAUAAAUAGUCGCAGGAACUGAAUGUAACUAAAAUCAGGAUAU
....((((.......((------(((..---...)))))((..((((((........))))))..))...................))))...((((.(........).))))..... ( -18.10)
>DroYak_CAF1 16040 115 - 1
UAUACUGUCCUGCAUAAUAUAAUAAUCC---ACCGUUUGCGCAAGUUGGUCAAAUAGCCAAUGCGCGCCCAUAACCAGAAAAAGUCGCAGAAACCGUAUGUAACUAAAAACAGGAUAU
.....(((((((................---...(..((((((..(((((......)))))))))))..)............(((..((.........))..))).....))))))). ( -25.80)
>consensus
UAUAGUGUCCAGCAAAAGGUGAGAAUCCUCAGCCAAUCGCGUAAGUUGGUCAAGUAGCCAACUUGCGCCCAUAAUCAGAAAAAGUCGCACAAACUGUAUGUAACUAAAAUUAAGAUAU
....((((...........((((....)))).......((((.(((((((......))))))).))))..................))))............................ (-15.15 = -16.14 +   0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:53 2006