Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,176,927 – 9,177,038 |
Length | 111 |
Max. P | 0.861171 |
Location | 9,176,927 – 9,177,038 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 76.63 |
Mean single sequence MFE | -20.60 |
Consensus MFE | -13.38 |
Energy contribution | -13.52 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.21 |
Mean z-score | -1.60 |
Structure conservation index | 0.65 |
SVM decision value | 0.83 |
SVM RNA-class probability | 0.861171 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9176927 111 + 27905053 UGCAUAAAUCAAUGCACAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUAACAAAGA----AUACAAUUUUUAAGAGACGGUGAAAGGUGGAAAAAAAUUAAG (((((......)))))...((((((....(((((.((........)).)))))...)))))).......----...((.((((((........)))))).))............. ( -18.20) >DroSec_CAF1 14140 111 + 1 UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUACAAUUUUUACGAGACGGCGAAAGCUGGAAAAAAAUGAAG (((((......)))))..(((((......(((((.((........)).)))))..(((((((....)))----))))....)))))....((((....))))............. ( -27.00) >DroSim_CAF1 13086 111 + 1 UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUACAAUUUUUACGAGACGGUGGAAGGUGGAAAAAAAUAAAG (((((......)))))..(((((((....(((((.((........)).)))))...)).))))).....----...((.(((((((......))))))).))............. ( -21.60) >DroEre_CAF1 19421 89 + 1 UGCAUAAAUCAAUGCAGAGUAAACAAAAGUACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUAAAA---------------------UGUGAAAAAAU-AAG (((((......))))).............(((..((((((.......))))))..)))(((((((....----......---------------------)))))))....-... ( -14.60) >DroYak_CAF1 10943 110 + 1 UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA----AUAAAAAUUGUACAAAAAGGAGAACGCUGAAAAAAAAU-UAG (((((......)))))..........................((((((((.((.....((.(((((...----.......))))).))....)).))))))))........-... ( -19.20) >DroAna_CAF1 10703 113 + 1 UGCAUAAAUCAAUGUUAAAUAAACAAGGAGGCGGAGCCAUUUUCAGUGCUGUCAGGUGUGCAGGAAACAAAAAAUGUUGUUUCUAG--GAAGGUGAGUCACUAAACGAAAUAAAG .((.....((..((((.....))))..)).))(..(((((((((.(..(........)..).((((((((......))))))))..--))))))).))..).............. ( -23.00) >consensus UGCAUAAAUCAAUGCAGAGUAAACAAAAGGACGAGGCAGCUAUCAGUGUUGUCAGGUGUUUUACAAAGA____AUACAAUUUUUACGAGACGGUGAAAGCUGGAAAAAAAU_AAG (((((......)))))..(((((((....(((((.((........)).)))))...))))).))................................................... (-13.38 = -13.52 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:51 2006