Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,170,187 – 9,170,284 |
Length | 97 |
Max. P | 0.619714 |
Location | 9,170,187 – 9,170,284 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 85.98 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -32.92 |
Energy contribution | -33.07 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.26 |
Mean z-score | -2.04 |
Structure conservation index | 0.79 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.619714 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9170187 97 - 27905053 CGGGCUGACUGACUUCCGAUGGGUCACCACUUUGAGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCUCUUUUGGCUCGCCCGGA (((((................((((((((....(((((((((((........)))))))))))))))))))....(((((.....)))))))))).. ( -46.70) >DroSec_CAF1 7486 97 - 1 CGGGCUGACUGACUUCUGAGGGGUCGCCACUUUGUGGUGGUGUCACCAGCAGGGCUCCACUUUUGGUGGCCAGGAGAGCUCUUUUGGCUCGCCCGGA (((((((((.(((((.....)))))((((((....))))))))))((((.(((((((...((((((...))))))))))))).))))...))))).. ( -44.10) >DroSim_CAF1 6398 97 - 1 CGGGCUGACUGACUUCCGAGGGGUCGCCACUUUGCGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAGGAGAGCUCUUUUGGCUCGCCCGGA (((((.........(((....((((((((......(((((((((........)))))))))..)))))))).)))(((((.....)))))))))).. ( -46.70) >DroEre_CAF1 7608 97 - 1 CGGGCUGACUGACUUCCGAUGGGUCACUACUUUGUGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCUCUUUUUGCUCGUCCGGA (((((................((((((((......(((((((((........)))))))))..))))))))....((((.......))))))))).. ( -39.00) >DroYak_CAF1 4187 97 - 1 CGGGCUGACUGACUUCCGCUGGGUCACUACUUUGUGUUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCCCUUUUGGCUCGUCCAGA .((((.......(((..((((((.((((((.....).))))).).))))).((.(((((....))))).))))).(((((.....)))))))))... ( -41.30) >DroAna_CAF1 4174 97 - 1 CCGGUUGACUGAGUUCCGGCGAUUCCACGUUUGGAGGGGGAGUGACCAAUAGAGCCCCACUCUUGGUGGCCAACAGAGCUCUCUUGGCCCGUCCAGC ..(((..(..((((((.(......((((....((((((((..(........)..)))).))))..))))....).))))))..)..)))........ ( -32.40) >consensus CGGGCUGACUGACUUCCGAUGGGUCACCACUUUGUGGUGGUGUCACCAGCAGGGCACCACUUUUGGUGGCCAAGAGAGCUCUUUUGGCUCGCCCGGA (((((.....(((((.....)))))..((((....(((((((((........)))))))))...))))((((((((....))))))))..))))).. (-32.92 = -33.07 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:50 2006