Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,166,917 – 9,167,014 |
Length | 97 |
Max. P | 0.882099 |
Location | 9,166,917 – 9,167,014 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 78.07 |
Mean single sequence MFE | -19.40 |
Consensus MFE | -11.10 |
Energy contribution | -11.74 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.06 |
Mean z-score | -2.06 |
Structure conservation index | 0.57 |
SVM decision value | 0.92 |
SVM RNA-class probability | 0.882099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9166917 97 + 27905053 UCAUUUAUAGACACUAAUUAA-AGUCAGGUCCAUAAAUGAACCAAGUUCAUUACAGACUAUGUAAUUAAGUUC---CAA---UAAAUGCGUUGUAA--------AGAUAGAA ((((((((.(((.((.((...-.)).))))).)))))))).......((.(((((....(((((.(((.....---...---))).))))))))))--------.))..... ( -14.90) >DroSec_CAF1 4585 84 + 1 UCAUUUAUUGACACUAAUUAAUAGUUAGGUCGAUAAAUGAACCAAGUUCAUUACAGACUAUGUAAUUAAGUUC---CAA---UAAAUGUG---------------------- ((((((((((((.(((((.....)))))))))))))))))...((.((.((((((.....)))))).)).)).---...---........---------------------- ( -21.10) >DroSim_CAF1 3184 98 + 1 UCAUUUAUUGACACUAAUUAAUAGUCAGGUCGAUAAAUGAACCAAGUUCAUUACAGACUAUGUAAUUAAGUUC---CAA---UAAAUGCGUUGUAA--------AGAUAGAA .(((((((((..((((((((((((((..((.....(((((((...))))))))).)))))).))))).)))..---)))---))))))........--------........ ( -20.80) >DroEre_CAF1 4499 104 + 1 UCAUUUAUUGACACUAAUUAGUAGUCAGGUCGAUAAAUGUACCAACUUCAUUAUAGACCAUGCACUUAAGUUC---CAU---UAAAUGCGUUGUAGGGGUAUAAAGA--UAA .(((((((((((((((.....))))...)))))))))))........((.(((((..(((((((.((((....---..)---))).)))))....))..))))).))--... ( -23.40) >DroYak_CAF1 1059 109 + 1 UCAUUUAUUGGCACUAAUUAAUAGUCACGUCGAUAAAUGUACCAAGUUCAUUAUAGACUACGC---UAAUUUCAUUCAUUCAUAAAUGCGCUGUAAUAAUAUAAAGAUAUAA .(((((((((((((((.....))))...)))))))))))........((.(((((.((..(((---.....................)))..)).....))))).))..... ( -16.80) >consensus UCAUUUAUUGACACUAAUUAAUAGUCAGGUCGAUAAAUGAACCAAGUUCAUUACAGACUAUGUAAUUAAGUUC___CAA___UAAAUGCGUUGUAA________AGAUAGAA ((((((((((((((((.....))))...))))))))))))........................................................................ (-11.10 = -11.74 + 0.64)
Location | 9,166,917 – 9,167,014 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.07 |
Mean single sequence MFE | -20.22 |
Consensus MFE | -9.30 |
Energy contribution | -9.38 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -2.10 |
Structure conservation index | 0.46 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807341 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9166917 97 - 27905053 UUCUAUCU--------UUACAACGCAUUUA---UUG---GAACUUAAUUACAUAGUCUGUAAUGAACUUGGUUCAUUUAUGGACCUGACU-UUAAUUAGUGUCUAUAAAUGA ........--------..............---...---(((((..((((((.....))))))......)))))((((((((((((((..-....)))).)))))))))).. ( -19.80) >DroSec_CAF1 4585 84 - 1 ----------------------CACAUUUA---UUG---GAACUUAAUUACAUAGUCUGUAAUGAACUUGGUUCAUUUAUCGACCUAACUAUUAAUUAGUGUCAAUAAAUGA ----------------------..((((((---(((---..(((.(((((.(((((..(((((((((...))))))).....))...)))))))))))))..))))))))). ( -19.80) >DroSim_CAF1 3184 98 - 1 UUCUAUCU--------UUACAACGCAUUUA---UUG---GAACUUAAUUACAUAGUCUGUAAUGAACUUGGUUCAUUUAUCGACCUGACUAUUAAUUAGUGUCAAUAAAUGA ........--------........((((((---(((---..(((.(((((.((((((.(((((((((...))))))).....))..))))))))))))))..))))))))). ( -23.60) >DroEre_CAF1 4499 104 - 1 UUA--UCUUUAUACCCCUACAACGCAUUUA---AUG---GAACUUAAGUGCAUGGUCUAUAAUGAAGUUGGUACAUUUAUCGACCUGACUACUAAUUAGUGUCAAUAAAUGA ...--..............(((((((((((---(..---....))))))))....((......)).))))...(((((((.(((((((.......)))).))).))))))). ( -21.90) >DroYak_CAF1 1059 109 - 1 UUAUAUCUUUAUAUUAUUACAGCGCAUUUAUGAAUGAAUGAAAUUA---GCGUAGUCUAUAAUGAACUUGGUACAUUUAUCGACGUGACUAUUAAUUAGUGCCAAUAAAUGA ...((((....((((((.((.((((.(((((......)))))....---)))).))..)))))).....))))(((((((....((.((((.....))))))..))))))). ( -16.00) >consensus UUAUAUCU________UUACAACGCAUUUA___UUG___GAACUUAAUUACAUAGUCUGUAAUGAACUUGGUUCAUUUAUCGACCUGACUAUUAAUUAGUGUCAAUAAAUGA ..................................................((...((......))...))...(((((((.(((((((.......)))).))).))))))). ( -9.30 = -9.38 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:48 2006