Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,297,240 – 1,297,342 |
Length | 102 |
Max. P | 0.862709 |
Location | 1,297,240 – 1,297,342 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 87.58 |
Mean single sequence MFE | -20.57 |
Consensus MFE | -16.79 |
Energy contribution | -17.57 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.07 |
Mean z-score | -2.47 |
Structure conservation index | 0.82 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1297240 102 + 27905053 GAAGAUUCUUCAUUUUAGUAACAUUGUUAAUGACCACUUAGUUAAAAACCACUUAUCAUUCUGAAGUGAAGACGUAUACAAACACACAU--------AGCCACACACUGC ......((((((((((((((((...)))).((((......))))................)))))))))))).................--------............. ( -13.40) >DroSec_CAF1 3275 102 + 1 GAAUAUUCUUCAUUUUAGUAACAUUGUUAAUGCCUACUUAGAUAUAAACCACAUAUCAUACUGAAGUGAAGACGUAUACAAACAUACAU--------AGGUUCACAUUGC ((((..((((((((((((((.(((.....)))........(((((.......))))).)))))))))))))).((((......))))..--------..))))....... ( -21.80) >DroSim_CAF1 3286 110 + 1 GAAUAUUCUUCAUUUUAGUAACAUUGUUAAUGCCUACUUAGAUAUAAACCACAUAUCAUACUGAAGUGAAGACGUAUACAAACAUACAUAUGUAUGUAGGUUCACAUUGC ......((((((((((((((.(((.....)))........(((((.......))))).)))))))))))))).((..((..((((((....))))))..))..))..... ( -26.50) >consensus GAAUAUUCUUCAUUUUAGUAACAUUGUUAAUGCCUACUUAGAUAUAAACCACAUAUCAUACUGAAGUGAAGACGUAUACAAACAUACAU________AGGUUCACAUUGC ((((..((((((((((((((.(((.....)))........(((((.......))))).)))))))))))))).((((......))))............))))....... (-16.79 = -17.57 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:45 2006