Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,158,028 – 9,158,118 |
Length | 90 |
Max. P | 0.902737 |
Location | 9,158,028 – 9,158,118 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.42 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -20.22 |
Energy contribution | -20.00 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.23 |
Mean z-score | -2.53 |
Structure conservation index | 0.81 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902737 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9158028 90 - 27905053 AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUAUUUGCAAGCGAAAGCUUCGAUUGAGAAUACAUACGCAGAA-----GUCUGAAA-----------------UUU ....(((.....(((....)))((((.(((......(((.(((.((((....))))))).))).....)))))))....-----))).....-----------------... ( -23.80) >DroSec_CAF1 49181 90 - 1 AAUUGAUGAGCCCCCAUAAGGGGCGUUAUGAAAACAUUAUUUGCGAGCGAAAGCUUCGAUUGAGAAUACAUAAGCAGAA-----GUCUGAAA-----------------UUU .........(((((.....))))).(((((......(((.(((.((((....))))))).))).....))))).(((..-----..)))...-----------------... ( -23.70) >DroSim_CAF1 44128 90 - 1 AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUAUUUGCGAGCGAAAGCUUCGAUUGAGAAUACAUACGCAGAA-----GUCUGAAA-----------------UUU ....(((.(((((((....)))).)))............(((((((((....)))((......)).......)))))).-----))).....-----------------... ( -24.80) >DroEre_CAF1 54619 90 - 1 AAUUGAUGAGCCCCCGUAAGGGGCGUGAGGAAAACAUUGUCUGCGAGCGAAAGCUUCGAUUAAGAAUACAUAAGCAGAA-----GUCUGAAA-----------------AAU ....((((...((((....))))(....).....)))).(((((.(((....)))((......))........))))).-----........-----------------... ( -24.80) >DroYak_CAF1 51119 90 - 1 AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUGUCUGCGAGCGAAAGCUUCGAUUAAGAAUACAUGAGCAGAA-----GUCUGAAA-----------------UUU ....(((.(((((((....)))).)))............(((((.(((....)))((......))........))))).-----))).....-----------------... ( -25.20) >DroPer_CAF1 58812 110 - 1 AUUUGAUGAGCCCCAGUUCGGGGCAUUAUGAAAACAUUGUUUGCGA--GAAACCUUCAAUCGAAAAGACAUAAGCAGAAAAACCGUCUGAAAAAAAGACAAAGCGCAAACUU .(((.(((((((((.....))))).)))).))).....(((((((.--......(((....)))....................((((.......))))....))))))).. ( -27.30) >consensus AAUUGAUGAGCCCCCGUAAGGGGCGUUAUGAAAACAUUAUUUGCGAGCGAAAGCUUCGAUUGAGAAUACAUAAGCAGAA_____GUCUGAAA_________________UUU .....(((.(((((.....)))))............(((.(((.((((....))))))).))).....)))...((((.......))))....................... (-20.22 = -20.00 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:44 2006