Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,151,378 – 9,151,471 |
Length | 93 |
Max. P | 0.944104 |
Location | 9,151,378 – 9,151,471 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -17.64 |
Consensus MFE | -14.40 |
Energy contribution | -14.60 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.82 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.944104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9151378 93 + 27905053 AUGCAUUCUUUGACAGUUAGGCCUUAAGCCCCAUAUUUAUGCAUCAAGCAUCAUAAUUAUGGCAACUGUCAGCUAUUUAUAAUUCAGUCAAAA .........(((((((((.(((.....)))(((((.(((((.((.....))))))).))))).)))))))))..................... ( -20.70) >DroSec_CAF1 42476 93 + 1 AUGCAUUCUUUGACAGUUAGGCCUUAAGCCCCUUCUUUAUGCAUCAUGCAUCAUAAUUAUGGCAACUGUCAGCUAUUUAUAAUUCAGUCAAAA .........(((((((((.(((.....)))........((((.....))))............)))))))))..................... ( -16.40) >DroSim_CAF1 37297 93 + 1 AUGCAUUCUUUGACAGUUAGGCCUUAAGCCCCUUCUUUAUGCAUCAUGCAUCAUAAUUAUGGCAACUGUCAGCUAUUUAUAAUUCAGUCAAAA .........(((((((((.(((.....)))........((((.....))))............)))))))))..................... ( -16.40) >DroEre_CAF1 47862 93 + 1 AUGCAUUCUCUGACAGUUAGGCCCUAAGCCCCUUCUUUAUGCAUCAUGCAUCAAAAUUAUGGCAUCUGUCAGCUAUUUAUAAUUCAGUCAAAU .........(((((((....(((.(((...........((((.....)))).....))).)))..)))))))..................... ( -16.59) >DroYak_CAF1 41663 93 + 1 AUGAAUUCUCUGACAGCUAGGCUUUAAGCCCCUUCUUUAUUUAUCAUGCAUCAUUAUUAUGGCAACUGUCAGCUAUUUAUAAUUCAGUCAAAU ((((((...(((((((...(((.....)))................(((..(((....)))))).)))))))..))))))............. ( -18.10) >consensus AUGCAUUCUUUGACAGUUAGGCCUUAAGCCCCUUCUUUAUGCAUCAUGCAUCAUAAUUAUGGCAACUGUCAGCUAUUUAUAAUUCAGUCAAAA .........(((((((((.(((.....)))........((((.....))))............)))))))))..................... (-14.40 = -14.60 + 0.20)
Location | 9,151,378 – 9,151,471 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 93.55 |
Mean single sequence MFE | -20.86 |
Consensus MFE | -16.66 |
Energy contribution | -17.14 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.69 |
Structure conservation index | 0.80 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.770862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9151378 93 - 27905053 UUUUGACUGAAUUAUAAAUAGCUGACAGUUGCCAUAAUUAUGAUGCUUGAUGCAUAAAUAUGGGGCUUAAGGCCUAACUGUCAAAGAAUGCAU ......................((((((((((((((......((((.....))))...)))))(((.....)))))))))))).......... ( -23.10) >DroSec_CAF1 42476 93 - 1 UUUUGACUGAAUUAUAAAUAGCUGACAGUUGCCAUAAUUAUGAUGCAUGAUGCAUAAAGAAGGGGCUUAAGGCCUAACUGUCAAAGAAUGCAU ......................((((((((............((((.....)))).......((((.....)))))))))))).......... ( -19.20) >DroSim_CAF1 37297 93 - 1 UUUUGACUGAAUUAUAAAUAGCUGACAGUUGCCAUAAUUAUGAUGCAUGAUGCAUAAAGAAGGGGCUUAAGGCCUAACUGUCAAAGAAUGCAU ......................((((((((............((((.....)))).......((((.....)))))))))))).......... ( -19.20) >DroEre_CAF1 47862 93 - 1 AUUUGACUGAAUUAUAAAUAGCUGACAGAUGCCAUAAUUUUGAUGCAUGAUGCAUAAAGAAGGGGCUUAGGGCCUAACUGUCAGAGAAUGCAU .....................(((((((.........((((.((((.....)))).))))..((((.....))))..)))))))......... ( -21.40) >DroYak_CAF1 41663 93 - 1 AUUUGACUGAAUUAUAAAUAGCUGACAGUUGCCAUAAUAAUGAUGCAUGAUAAAUAAAGAAGGGGCUUAAAGCCUAGCUGUCAGAGAAUUCAU .......((((((........((((((((((((((....)))..))................((((.....)))))))))))))..)))))). ( -21.40) >consensus UUUUGACUGAAUUAUAAAUAGCUGACAGUUGCCAUAAUUAUGAUGCAUGAUGCAUAAAGAAGGGGCUUAAGGCCUAACUGUCAAAGAAUGCAU ......................((((((((............((((.....)))).......((((.....)))))))))))).......... (-16.66 = -17.14 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:42 2006