Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,144,847 – 9,144,967 |
Length | 120 |
Max. P | 0.731831 |
Location | 9,144,847 – 9,144,967 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 87.83 |
Mean single sequence MFE | -36.90 |
Consensus MFE | -28.78 |
Energy contribution | -29.06 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -1.70 |
Structure conservation index | 0.78 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731831 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9144847 120 + 27905053 AAAAAGGUGACCGCAACAUGCAGGCAAUUAGGAAGAAGGUGGCCUCAGUUGCCGGAGUGCUGAUCAGCAUCAGGAGGGAAACCACCAAGAUGGCCAUCAGGAAAGUGGAAGACUGCAUGA .....(....).....(((((((..............(((((((((........((.((((....)))))).((.((....)).))..)).)))))))..............))))))). ( -38.29) >DroSec_CAF1 35787 120 + 1 AAAGUGGUGACCGCAACAUGCAGGCGAUUAGGAAGAAGGUGGCCUCAGUUGCCGGAGUGCUGAUUAGCAUCAGUAGGGAAACCACCAAGAUGGCCAUCAGGAAAGUAGAAGACUGCAUGA ...((((...))))..(((((((..............(((((((((...........(((((((....)))))))((....)).....)).)))))))..............))))))). ( -39.59) >DroEre_CAF1 39857 120 + 1 AAAGUGGUGACCGCAACAUACAGGCGAUCAGGAAGAAUGUGGCCUCAGUUGCCGGAGUGGUGAACAACAUGAGCAGGGCAACCACCAAGAUGGCCAUCAGGAAAGUGGAAGACUGCAUGG ...(..((..((((.........(((.((.....)).)))((((((...(((((...((.....))...)).)))((....)).....)).)))).........))))...))..).... ( -29.90) >DroYak_CAF1 33111 120 + 1 AAAGCGGUGAACGCAACAUGCAGGCAAUCAGAAGGAAGGUGGCCUCAGUUGCUGGAGUGCUGAACAACAUGACCAGGGCAACCACCAAAAUGGCCAUCAGGAAAGUGGAAGACUGCAUGA ...(((.....)))..(((((((....(((.......(((((((....(((.(((.((.(((..(.....)..))).))..))).)))...))))))).......)))....))))))). ( -38.04) >DroAna_CAF1 31269 120 + 1 AGAGAGGGGAUCGCAGCAUGCAGGCGAUCAGGAAGAAGGUGGCCUCCGUAGCUGGAGCGCUGCACAGCAUGAGCAGGGCAACCACCAAAAGGGCCAUCAGGAAAGUGGAGGACUGCAUGA ........((((((.(....)..)))))).........(..(((((((((((......)))))...(.(((.((.((....)).((....))))))))........))))).)..).... ( -38.70) >consensus AAAGAGGUGACCGCAACAUGCAGGCGAUCAGGAAGAAGGUGGCCUCAGUUGCCGGAGUGCUGAACAGCAUGAGCAGGGCAACCACCAAGAUGGCCAUCAGGAAAGUGGAAGACUGCAUGA ...(((.....)))..(((((((....(((.......(((((((...((((.(((....)))..)))).......((....))........))))))).......)))....))))))). (-28.78 = -29.06 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:41 2006