Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,134,438 – 9,134,546 |
Length | 108 |
Max. P | 0.621720 |
Location | 9,134,438 – 9,134,546 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 75.51 |
Mean single sequence MFE | -45.58 |
Consensus MFE | -20.18 |
Energy contribution | -20.68 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.31 |
Mean z-score | -1.96 |
Structure conservation index | 0.44 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.621720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9134438 108 + 27905053 CUUUCUGCUAGUCCUCUGCGGCUUCCUGCUGGGCGCCCUCGUCUACGUCGGCAAGAAUAUAGCCGAGGAGCACCAGAGGC------AGCAGCACGCGAAUG---CUUCCCAGUGGGC ((..(((..(((..((.((((((..(((((.((.(((((((.(((..((.....))...))).))))).)).))...)))------)).))).)))))..)---))...)))..)). ( -40.40) >DroVir_CAF1 50481 108 + 1 GUUUCUUUUGGUGCUCUGCAGUUUUCUGCUCGGCGCUUUGGUUUAUGUUGGCAAAAAUAUAGCCGACGAGCAUCAGAAGC------AGCAG---GCGAGCGGUAGUACGCUGAGCGU (((.((((((((((((.((((....))))(((((((....)).((((((......))))))))))).)))))))))))).------)))..---((.((((......))))..)).. ( -43.30) >DroPse_CAF1 26499 108 + 1 GUUCCUCCUGGUGCUGUGCGGCUUCCUGCUGGGGGCACUCGUCUAUGUGGGCAAGAACAUAGCCGACGAGCACCAGAGGC------AGCAGGCGGCGAACA---GCACGCAGGCGGC ...((.(((((((((((((.((((.(((((...((..((((((..((((........))))...))))))..))...)))------)).)))).))..)))---)))).)))).)). ( -53.80) >DroGri_CAF1 54194 105 + 1 AUUUCUGCUGGUGCUGUGCAGUUUUCUGUUGGGCGCCUUGGUUUAUGUGGGCAAGAAUAUUGCCGAGGAGCAUCAGAGGC------AGCAG---GCGGGCG---GCACUCUGGCCGU ....(((((..((((((((((....))))(((((.(((((((..((((........)))).))))))).)).)))...))------)))))---))))(((---((......))))) ( -41.10) >DroAna_CAF1 26953 114 + 1 CUUCCUGCUUGUGCUGUGCGGCUUCCUGCUGGGCGCCCUUGUCUAUGUGGGCAAGAAUAUAGCCGAUGACCAAAAGAGACAGCAACAGCAGCAAGCCAACA---GCUCCCAGUUGGG ...((.(((.(.(((((..(((((.(((((((((...(((((((....)))))))......)))(.....)..............)))))).))))).)))---)).)..))).)). ( -41.10) >DroPer_CAF1 36234 108 + 1 GUUCCUCCUGGUGCUGUGCGGCUUCCUGCUGGGGGCACUCGUCUAUGUGGGCAAGAACAUAGCCGACGAGCACCAGAGGC------AGCAGGCGGCGAACA---GCACGCAGGCGGC ...((.(((((((((((((.((((.(((((...((..((((((..((((........))))...))))))..))...)))------)).)))).))..)))---)))).)))).)). ( -53.80) >consensus GUUCCUGCUGGUGCUGUGCGGCUUCCUGCUGGGCGCCCUCGUCUAUGUGGGCAAGAAUAUAGCCGACGAGCACCAGAGGC______AGCAG___GCGAACA___GCACGCAGGCGGC ...(((.((((((((...(((((.((..((((((......))))).)..)).........)))))...)))))))))))........((.....))..................... (-20.18 = -20.68 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:40 2006