Locus 3382

Sequence ID 3R_DroMel_CAF1
Location 9,130,124 – 9,130,230
Length 106
Max. P 0.872645
window5433

overview

Window 3

Location 9,130,124 – 9,130,230
Length 106
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.42
Mean single sequence MFE -36.27
Consensus MFE -25.76
Energy contribution -25.40
Covariance contribution -0.36
Combinations/Pair 1.26
Mean z-score -1.76
Structure conservation index 0.71
SVM decision value 0.88
SVM RNA-class probability 0.872645
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9130124 106 - 27905053
AAAAUUACUCACCUAUCUACUCCAUCGGCAUUCGUGUAGUUGCUGAUGUAGCUGCCCACCAGACUGCUCAGAUCGCAGUCGAAACUUGCGGACAGUGUGUAGGCCU
...........(((((.((((...((.(((((((.((((((((....)))))))).)....((((((.......)))))))))...))).)).)))).)))))... ( -34.00)
>DroPse_CAF1 22740 100 - 1
------ACUCACUUUUCAUUGCCCGCGGCAUCUGUGUAGCUGCUUCUGUAGCUGCCCGUCAGACUGUCGAGGUUGCAGUCGAAGCUGGCGGACAGGGUAUAGGCCU
------..............(((....((.(((((((((((((....))))))))(((((((.((.((((........))))))))))))))))))))...))).. ( -37.60)
>DroEre_CAF1 28758 106 - 1
AAAAUUACUCACCUAUCCACUCUAUUGGCAUCCGUGUAGUUGCUAAUGUAGCUGCCCACCAGACUGCUCAGGUUGCAGUCGAAGCUGGCGGACAGUGUAUAGGCCU
...........(((((.(((((..(..((.((.(.((((((((....)))))))).)....((((((.......)))))))).))..)..))..))).)))))... ( -36.90)
>DroYak_CAF1 22619 106 - 1
AAAAUGACUCACCUAUCCAGUCCAUCGGCAUCCGUGUAGUUGCUAAUGUAGCUGCCCACCAGACUGCUCAGGUUGCAGUCGAAGCUGGCGGACAGUGUGUAGGCCU
...........((((..((((((..((((.((.(.((((((((....)))))))).)....((((((.......)))))))).))))..))))..))..))))... ( -40.40)
>DroAna_CAF1 22653 106 - 1
AAAUCGACUUACUUUGAAAUGCCAUCGCCGCCGGCAUAGCUGCUAAUGUAGCUUCCCGUCAGACUGCUCAGGUCGCAAUCGAAACUGGCCGACAGGGUGUAGGCCU
...((((......))))...(((..(((((.(((...((((((....))))))..))).)...(((.((.(((((..........))))))))))))))..))).. ( -31.10)
>DroPer_CAF1 32439 100 - 1
------ACUCACUUUUCAUUGCCCGCGGCAUCUGUGUAGCUGCUUCUGUAGCUGCCCGUCAGACUGUCGAGGUUGCAGUCGAAGCUGGCGGACAGGGUAUAGGCCU
------..............(((....((.(((((((((((((....))))))))(((((((.((.((((........))))))))))))))))))))...))).. ( -37.60)
>consensus
AAAAU_ACUCACCUAUCAAUGCCAUCGGCAUCCGUGUAGCUGCUAAUGUAGCUGCCCACCAGACUGCUCAGGUUGCAGUCGAAGCUGGCGGACAGGGUAUAGGCCU
..........................(((.(((((((((((((....))))))))......((((((.......)))))).......)))))(........)))). (-25.76 = -25.40 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:39 2006