Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,128,509 – 9,128,607 |
Length | 98 |
Max. P | 0.659488 |
Location | 9,128,509 – 9,128,607 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 78.03 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -20.86 |
Energy contribution | -21.97 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.14 |
Mean z-score | -1.52 |
Structure conservation index | 0.61 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.659488 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9128509 98 + 27905053 CUCA-------UUUUAGGGCUGACGGUUAAGUCAGUGGCCAUCUUUUUGGGCCUGGCCUCUACUGCUUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAAUGC ....-------...((((((((((......))))))((((((((....)))..)))))))))..((.(((((..((((((((....)).))))))..))))).)) ( -32.60) >DroVir_CAF1 43308 104 + 1 AUCC-AUUUUCGAUCAGGGCUAACGGUCAAGGUGGUGGCCAUCUGCUUGGGCCUGACCACAACAGCCUUUUGUGUGGCCACAAUUGUGUUGGCCGUGGAGAAUGC ...(-((((((...((.((((((((..(((....((((((((..((..((((.((.......))))))...))))))))))..))))))))))).))))))))). ( -40.80) >DroPse_CAF1 21155 96 + 1 CCC---------UUUAGGGCUGACUGUCAAAUUUGUGGCCAUCUUCCUGGGCCUUGCCACAACGGCCUUCUGUAUUUCCACCAUUGUGCUGGCCGUACAGAAAUC (((---------....)))....((((......((((((..(((....)))....))))))((((((....((((..........)))).))))))))))..... ( -27.40) >DroSec_CAF1 25655 98 + 1 CUCG-------UUUUAGGGCUGACGGUUAAGUCAGUGGCCAUCUUUUUGGGCCUGGCCUCCACUGCUUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAAUGC ....-------.....((((((((......))))))((((((((....)))..))))).))...((.(((((..((((((((....)).))))))..))))).)) ( -33.70) >DroEre_CAF1 27075 98 + 1 UUUA-------CCAUAGGGCUGACGGUAAAGUCACUGGCCAUCUUUUUCGGCCUGGCCGCCACUGCUUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAACGC ....-------.....(..((((((((..((.(((.((((.........))))(((((((.((........))))))))).....))))).)))).))))..).. ( -35.70) >DroAna_CAF1 21022 104 + 1 UUCGAUUUAA-UCGCAGGGCUGACGGUCAAGGCAGUGGCCAUCUUUUUGGGCCUGGCCACAACGGCCUUUUGUGUGUCAACCAUUGUGCUGGCGGUUCAGAAUGC ..........-..(((...(((((.((((..((((((((((......)))...(((((((((.......))))).)))).)))))))..)))).).))))..))) ( -34.00) >consensus CUCA_______UUUUAGGGCUGACGGUCAAGUCAGUGGCCAUCUUUUUGGGCCUGGCCACAACUGCCUUUUGUGUGGCCACGAUUGUGCUGGCCGUUCAGAAUGC ...................((((((((((.....((((((((......((((............)))).....))))))))........))))))).)))..... (-20.86 = -21.97 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:37 2006