| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,127,241 – 9,127,337 |
| Length | 96 |
| Max. P | 0.725501 |
| Location | 9,127,241 – 9,127,337 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.63 |
| Mean single sequence MFE | -26.27 |
| Consensus MFE | -14.25 |
| Energy contribution | -15.00 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.41 |
| SVM RNA-class probability | 0.725501 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9127241 96 - 27905053 UGCAGACAAUCUGGAACACCCAGGGCACAGGCGGCGGUCAAAAUGGAAACACGCAGGCGGCUGCAAA------GGAAUAAAGAUUGUUUGAAUAACAGUAGU ..((((((((((((.....)).........(((((.(((....((....))....))).)))))...------.......))))))))))............ ( -29.20) >DroSec_CAF1 24401 81 - 1 UGCAGACAAUCUGGAACACCCAGGGCACAGGCGGCGGUCAAAAUGGAAACACGCAGGCGGCUGCAAA------GGAAUAGGGAUUAG--------------- ..(((.....))).....(((.(..(....(((((.(((....((....))....))).)))))...------.)..).))).....--------------- ( -24.30) >DroSim_CAF1 20307 81 - 1 UGCAGACAAUCUGGAACACCCAGGGCGCAGGCGGCGGUCAAAAUGGAAACACGCAGGCGGCUGCAAA------GGAAUAGGGAUUAG--------------- (((.(....(((((.....))))).)))).(((((.(((....((....))....))).)))))...------..............--------------- ( -23.80) >DroEre_CAF1 25800 95 - 1 UGCAGACAAUCUGGAACACCCAAUGCACAGGCGGCGGUCAAAAUGGAAACUCGCAGGCGGCUGCAAA------GGAAUAUGGAAUGUUUGAGUAACA-UAGA ..((((((.(((((.....)).........(((((.(((.....(....).....))).)))))...------.......))).)))))).......-.... ( -24.50) >DroYak_CAF1 19692 95 - 1 UGCAGACAAUCUGGAACACCCAGGGCACAGGCGGCACUCAAAAUGGAAACCCGCAGGCGGCUGCAAA------GGAAUAUGGAACAUUUGAGUAACA-UAGA (((((.(..(((((.....)))))((....((((...((......))...))))..))).)))))..------....((((..((......))..))-)).. ( -24.90) >DroPer_CAF1 29536 93 - 1 UCCAGACAGUCGGGCAGGCCAAGGGAACAGGCCGCGGACAGGAUGGACACCCGCAGUCGACUGUAAUGUCGGAAGAGUAAGGAAUU-----GUAAGA-G--- (((..((((((((.(.((((..(....).))))((((.............)))).)))))))))....((....))....)))...-----......-.--- ( -30.92) >consensus UGCAGACAAUCUGGAACACCCAGGGCACAGGCGGCGGUCAAAAUGGAAACACGCAGGCGGCUGCAAA______GGAAUAAGGAAUAU____GUAACA_U___ .........(((((.....)))))......(((((.(((.....(....).....))).)))))...................................... (-14.25 = -15.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:36 2006