Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,287,768 – 1,287,883 |
Length | 115 |
Max. P | 0.760843 |
Location | 1,287,768 – 1,287,883 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 77.32 |
Mean single sequence MFE | -30.82 |
Consensus MFE | -17.72 |
Energy contribution | -17.33 |
Covariance contribution | -0.39 |
Combinations/Pair | 1.33 |
Mean z-score | -1.76 |
Structure conservation index | 0.57 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.760843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1287768 115 - 27905053 GGAUGUGGAUAUAAAGGUGGUAGUGCCCGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACUAUGCUGUGGAAGUACAAGGUAAGUGGUGAUGGCUUUAAUAUUAAA .......(((((.(((((((((((.((....)).))))))..((((....((....(((..((((((......))))))...)))...))....))))...))))).)))))... ( -29.90) >DroVir_CAF1 29352 111 - 1 GGAUGUGGAUAUUAGAGUUGUAGUGCCAGAGGGCAUUAUAUGUGCAUUCAGCAAGAGUGAUCCGGAGCUGAUGCUCUGGAAGCAUCAGGUGAGUAAAAAAAA----AACAUUAUU .(((((............(((((((((....)))))))))....(((((.....))))).((((((((....)))))))).)))))................----......... ( -33.70) >DroSec_CAF1 58211 115 - 1 GGAUGUGGAUAUAAAGGUGGUAGUGCCCGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACGAUGCUGUGGAAGUACAAGGUAAGUGGUGAAGACUUUAACAUUAUA .(((((.....(((((((((((((.((....)).)))))).))..(((((.((...(((..((((((......))))))...)))........)).))))).))))))))))... ( -29.60) >DroSim_CAF1 55735 115 - 1 GGAUGUGGAUAUAAAGGUGGUAGUGCCCGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACGAUGCUGUGGAAGUACAAGGUAAGUGGUGAAGACUUUAACAUUAUA .(((((.....(((((((((((((.((....)).)))))).))..(((((.((...(((..((((((......))))))...)))........)).))))).))))))))))... ( -29.60) >DroWil_CAF1 41343 111 - 1 AGAUGUGGAUAUACGAGUGGUGGUGCCAGAGGGUAUAAUAUGUGCCUUCAGUAAAAGCGAUCCACAGAACAUUCUGUGGAAGUAUCAGGUAGGCUAUAAU---UCCAAAAUUC-A .((..((((.......(((((..((((.((((((((.....)))))))).......((..((((((((....)))))))).))....)))).)))))...---))))....))-. ( -34.30) >DroAna_CAF1 55302 110 - 1 GGAUGUGGAUAUUAAAGUGGUGGUCCCAGAGGGAGUCAUUUGUGCUUUCAGCAAGAGUGAUCCGAAGUCCAUGCUCUGGAAGUACAAGGUAAGU--UGGAGGCAUUAAU---CGA .(((((((((.......(((.....)))...(((.((((((.(((.....))).)))))))))...))))...(((..(...(((...)))..)--..))))))))...---... ( -27.80) >consensus GGAUGUGGAUAUAAAAGUGGUAGUGCCAGAGGGAAUUAUCUGCGCCUUCAGCAAAAGUGAGCCACAGACGAUGCUGUGGAAGUACAAGGUAAGUGGUGAAGACUUUAACAUUAUA .......................((((.(((((...........))))).......(((..((((((......))))))...)))..))))........................ (-17.72 = -17.33 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:44 2006