| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 9,122,031 – 9,122,145 |
| Length | 114 |
| Max. P | 0.784416 |
| Location | 9,122,031 – 9,122,145 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 78.12 |
| Mean single sequence MFE | -37.99 |
| Consensus MFE | -24.12 |
| Energy contribution | -25.32 |
| Covariance contribution | 1.20 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784416 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9122031 114 - 27905053 GGUCCGGAUUUUCCACGGUCUGGAUUAUCGGGUGGGAUCCGAGGGUUCCGUCCAAGGUGAGUACGCUGUGCAAAGUGCUCACCGUGAAUUGAUCGCGCUAUUGA---UAU--GAUAUGU .(((((((((......)))))))))((((((..((((((....))))))..))..(((((((((..........)))))))))((((.....))))......))---)).--....... ( -43.80) >DroGri_CAF1 26242 113 - 1 GAUCGGGAUUCUCAACCUUCUGUAUAAUGGGAUGGGAACCCAGAGUGCCAUCCAAGCUAAACACUCCGUGCAAAGUGCUCACAAUAAAUUGAUCACGCUAUAAA----UU--AAAAUUC (((((((.((((((.(((..........))).))))))))).(((((..............))))).(.((.....)).)..........))))..........----..--....... ( -24.84) >DroSim_CAF1 15144 114 - 1 GGUCCGGAUUUUCAACGGUCUGGAUUAUCGGGUGGGAGCCGAGGGUUCCGUCCAAGGUGAGUACGCCGUGCAAAGUGCUUACGGUGAAUUGAUCGCGCUAUUGA---UAU--GAUAUGU .(((((((((......)))))))))((((((..((((.(....).))))..))..(((.(((.((((((((.....))..)))))).))).)))........))---)).--....... ( -38.10) >DroEre_CAF1 19789 119 - 1 GGUCAGGAUUCUCCACGGUCUGGAUGAUCGGGUGGGAGCCGAGGGUUCCAUCCAAGGUGAGUACACUGUGCAAAGUGCUCACGCUGAAUUGAUCACGCUGUGGAGUAUAUUAUAUAUCG (((...(((.(((((((((...(.(((((((((((((.(....).)))))))).((((((((((..........)))))))).)).....)))))))))))))))...)))....))). ( -46.20) >DroYak_CAF1 14396 116 - 1 GGUCGGGAUUCUCCACGGUCUGGAUGAUCGGGUGGGAGCCGAGGGUUGCAUCCAAAGUGAGUACGCUGUGUAAAGUGCUCACGAUGAAUUGAUCACGCUACGGAGU---UUAGACAUGG .(((..(((((((((.....))))((((((((((.((.(....).)).)))))...((((((((..........))))))))........))))).......))))---)..))).... ( -39.60) >DroAna_CAF1 14363 115 - 1 GGUCGGGGUUCUCCACAGUCUGGAUGAUGGGAUGAGAGCCGAGAGUACCAUCUAAGGUGAGUACGCUGUGCAGAGUACUCACGAUGAACUGAUCCCGCUGUUUU---U-UUAAAUAAAG (((((((((((((..(.(((.....))).)...)))))))........((((....((((((((.((....)).))))))))))))..))))))..........---.-.......... ( -35.40) >consensus GGUCGGGAUUCUCCACGGUCUGGAUGAUCGGGUGGGAGCCGAGGGUUCCAUCCAAGGUGAGUACGCUGUGCAAAGUGCUCACGAUGAAUUGAUCACGCUAUUGA___UAU__GAUAUGG (((((((((..((((.....))))..)))((((((((.(....).))))))))...((((((((..........))))))))......))))))......................... (-24.12 = -25.32 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:34 2006