Locus 3377

Sequence ID 3R_DroMel_CAF1
Location 9,119,115 – 9,119,206
Length 91
Max. P 0.552062
window5428

overview

Window 8

Location 9,119,115 – 9,119,206
Length 91
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 78.12
Mean single sequence MFE -35.35
Consensus MFE -18.20
Energy contribution -18.98
Covariance contribution 0.78
Combinations/Pair 1.23
Mean z-score -1.84
Structure conservation index 0.51
SVM decision value 0.04
SVM RNA-class probability 0.552062
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 9119115 91 - 27905053
CUUGCUCGCAGCAAGGCGGAUCCUUCACCUCCGCCGGCGCAGGACG-----AGAGCAGGUAGUCAACCAGGAAACUGGGCUGCUCCGCAAUUGCGU
.((((.....))))((((((.........)))))).((((((..((-----.(((((((....)..((((....)))).))))))))...)))))) ( -40.10)
>DroVir_CAF1 32100 83 - 1
GUUGCUGGCGACGAGGA---UC----------GACGCCGCAGGAUGGACGCCGGGCAGGUAGAGGGAAACAAAACUGGGCUGCUCCGCAAUUGCGU
.((((.((((.((....---.)----------).)))))))).....(((((((((((.(((..(....)....)).).)))).))).....)))) ( -27.30)
>DroSec_CAF1 16198 91 - 1
GUUGCUCACAGCAAGGCGGAUCCUCCACCUCCGCCGGCGCAGGACG-----AGAGCAGGUAGUCAAUCAGGAAACUGGGCUGCUCCGCAAUUGCGU
.((((.....))))((((((.........)))))).((((((..((-----.(((((((....)..((((....)))).))))))))...)))))) ( -37.20)
>DroSim_CAF1 12194 91 - 1
GUUGCUCACAGCAAGGCGGAUCCUCCACCUCCGCCGGCGCAGGACG-----AGAGCAGGUAGUCAACCAGGAAACUGGGCUGCUCCGCAAUUGCGU
.((((.....))))((((((.........)))))).((((((..((-----.(((((((....)..((((....)))).))))))))...)))))) ( -40.20)
>DroEre_CAF1 16904 76 - 1
GUUGAUCGCAGCGA------------UCCUCUGC---CGCAGGACG-----AGAGCAGGUAGUCAACCAGGAAACUGGGCUGCUCCGCAAUUGCGU
.......(((((((------------(..(((((---(.(.....)-----.).)))))..)))..((((....)))))))))..(((....))). ( -30.00)
>DroYak_CAF1 11433 88 - 1
GUUGCUCACAGCGAGGAGGAUCCUCCUCCUCCGC---CGCAGGACG-----AGGCCAGGUAGUCAACCAGGAAACUGGUCUGCUCCGCAAUUGCGU
((((....))))(((((((.....)))))))...---(((((....-----..((..(((((...(((((....))))))))))..))..))))). ( -37.30)
>consensus
GUUGCUCACAGCAAGGCGGAUCCUCCACCUCCGCCGGCGCAGGACG_____AGAGCAGGUAGUCAACCAGGAAACUGGGCUGCUCCGCAAUUGCGU
((((....))))...............(((.((....)).))).........((((((........((((....)))).))))))(((....))). (-18.20 = -18.98 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:33 2006