Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,110,819 – 9,110,929 |
Length | 110 |
Max. P | 0.523839 |
Location | 9,110,819 – 9,110,929 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.12 |
Mean single sequence MFE | -40.70 |
Consensus MFE | -24.72 |
Energy contribution | -25.70 |
Covariance contribution | 0.98 |
Combinations/Pair | 1.22 |
Mean z-score | -1.53 |
Structure conservation index | 0.61 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9110819 110 + 27905053 ----------CGGCAUACAGUAAAGCUGCCAUAAAGGCGCCAUUGUUCAUCACCAGCGACAGGAUGGUGGCCAUCUUAAGGGCGGGCAGGAUGAAGGGCAGGAGACUGCCAAGCAGGACG ----------.(((....((.....))(((.....)))))).(((((((((.((.((...(((((((...)))))))....)).))...)))))..(((((....)))))..)))).... ( -38.80) >DroPse_CAF1 2783 110 + 1 ----------CGGCGUAGAGCAGGGCGGCCAAGAAGGCGCCAUUGUUCAUCACCAGCGACAUAAUGGUGGCCAUCUUGAGGGCAGGCAGGAUGAAGGGCAGCAGGCUGCCCAGCAGGACG ----------.(((...((((((((((.((.....)))))).))))))..(((((.........))))))))((((((........))))))...((((((....))))))......... ( -45.30) >DroWil_CAF1 2606 110 + 1 ----------CCGCAUAGAGCAGUGCGGCCAUGAAAGCGCCAUUGUUCAUAAGAAGUGACAAAAUGGUGGCCAUUUUUAGAGCCGGCAAAAUAAAUGGCAAAAGGCUGCCCAACAAUAUA ----------..((.....)).(.((((((.......(((((((..((((.....))))...)))))))(((((((.....(....).....)))))))....)))))).)......... ( -32.30) >DroMoj_CAF1 16856 120 + 1 GCCGAGGAGUACGCGUAGAGCAUAGCGGCCAGGAAGGCGCCGUUGUUCAUUAGGAGCGACAUAAUGGUGGCCAUCUUGAGGGUGGGCAGGAUGAAGGGCAGCAGGCUGCCCAAGAGUACG ........((((((.....))...((.((((((......))(((((((.....)))))))....)))).))(((((((........)))))))..((((((....))))))....)))). ( -45.10) >DroAna_CAF1 3205 110 + 1 ----------CGGCAUACAGGAGGGCGGCCAUGAAGGCACCGUUAUUCAUCACCAGCGACAGGAUUGUGGCCAUUUUGAGCGCGGGCAGGAUGAAGGGCAGGAGGCUGCCCAGCAGCACC ----------..((........((...(((.....))).))(((.((((((.((.(((.((((((.......))))))..))).))...))))))((((((....))))))))).))... ( -37.40) >DroPer_CAF1 12318 110 + 1 ----------CGGCAUAGAGCAGGGCGGCCAAGAAGGCGCCAUUGUUCAUCACCAGCGACAUAAUGGUGGCCAUCUUGAGGGCAGGCAGGAUGAAGGGCAGCAGGCUGCCCAGCAGGACG ----------.(((...((((((((((.((.....)))))).))))))..(((((.........))))))))((((((........))))))...((((((....))))))......... ( -45.30) >consensus __________CGGCAUAGAGCAGGGCGGCCAUGAAGGCGCCAUUGUUCAUCACCAGCGACAUAAUGGUGGCCAUCUUGAGGGCGGGCAGGAUGAAGGGCAGCAGGCUGCCCAGCAGGACG .................((((((.(..(((.....)))..).)))))).......((.((......)).))(((((((........)))))))..((((((....))))))......... (-24.72 = -25.70 + 0.98)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:31 2006