Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,108,124 – 9,108,223 |
Length | 99 |
Max. P | 0.974072 |
Location | 9,108,124 – 9,108,223 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 76.37 |
Mean single sequence MFE | -37.18 |
Consensus MFE | -26.18 |
Energy contribution | -25.68 |
Covariance contribution | -0.49 |
Combinations/Pair | 1.33 |
Mean z-score | -2.04 |
Structure conservation index | 0.70 |
SVM decision value | 1.72 |
SVM RNA-class probability | 0.974072 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9108124 99 - 27905053 C------GGCGGAAGCAGCUGGUGUGGCAGCCAUUUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUACUGCCUAUUAUGUUGGGCGACA .------(((((.....((((..((((((((.((......)).)))))))))))).....)))))(((.((((((((((((.....))).))))))))).))).. ( -42.60) >DroPse_CAF1 222 99 - 1 U------GGCUGAGGAAGCGGGAGCGGCGGCCAUCUUGUUGUUGUUGCCGUCAGCAAUGGCCGUCUCGGCCAGUAUGAAGGUGCUGCCUAUUAUGUUGGGCGUCA .------(((((((...((....)).((((((((..(((((.((....)).))))))))))))))))))))(((((....)))))(((((......))))).... ( -43.30) >DroGri_CAF1 12664 86 - 1 -------------------GCCAGUUGCUGACAUCUUGUUGUUGUUGGCAUCGGCGAUGGCUGUCUCGGCCAAUAUAAAGGUGCUGCCUAUUAUAUUCGGUGCCA -------------------(((...(((..(((.(.....).)))..)))..)))..((((((...)))))).......((..(((...........)))..)). ( -29.50) >DroWil_CAF1 6 99 - 1 C------UCCAGAAGCGGAAGCGGGAGCGGCCAUCUUAUUGUUGUUACCAUCGGCAAUUGCCGUUUCGGCCAAUAUAAAGGUGCUGCCUAUUAAAUUGGGUGUCA (------(((....((....)).)))).(((((((((..(((((...((..((((....))))....)).)))))..))))))..(((((......)))))))). ( -32.30) >DroAna_CAF1 2 105 - 1 CAGCAGUGGCGGUAGCGGAAGGUUUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGUCGUCUCGGCUAAUAUGAAAGUGCUUCCUAUUAUGUUGGGUGUCA .((((.(..((.((((.((......(((((((((..(((((.((....)).)))))))))))))))).))))...))..).)))).((((......))))..... ( -32.30) >DroPer_CAF1 9774 99 - 1 U------GGCUGAGGAAGCGGGAGCGGCGGCCACCUUGUUGUUGUUGCCGUCAGCAAUGGCCGUCUCGGCCAGUAUGAAGGUGCUGCCUAUUAUGUUGGGCGUCA .------(((((((...((....)).(((((((..((((((.((....)).))))))))))))))))))))(((((....)))))(((((......))))).... ( -43.10) >consensus C______GGCGGAAGCAGCGGGAGUGGCGGCCAUCUUGUUGUUGUUGCCAUCGGCAAUGGCCGUCUCGGCCAAUAUAAAGGUGCUGCCUAUUAUGUUGGGCGUCA .........................((((((((..((((((.((....)).)))))))))))))).((.((((((((((((.....))).))))))))).))... (-26.18 = -25.68 + -0.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:30 2006