Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,106,150 – 9,106,269 |
Length | 119 |
Max. P | 0.973485 |
Location | 9,106,150 – 9,106,269 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 69.08 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -13.56 |
Energy contribution | -14.23 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.24 |
Mean z-score | -2.01 |
Structure conservation index | 0.54 |
SVM decision value | 1.71 |
SVM RNA-class probability | 0.973485 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9106150 119 - 27905053 UUUCUUCUAUAUUACUCUGACGCAUUCGCAAUUAGCGUUUGCGGCUAGGAAAAAAGAGAUUCGAUUCGAAUCGAAGCGAUUUGAUUCGUGAAACUAAACUCCA-AAAGUCAACUAUAUAG ......((((((.....(((((((..(((.....)))..))).....(((......((.((((...(((((((((....))))))))))))).))....))).-...))))...)))))) ( -30.30) >DroSim_CAF1 16973 114 - 1 UUUCUUAUAUAUUACUCUGACGCAUUCGCAAUUAGCGCUUGCGACUAGGAAAAAAGAGAUUCGAUUCGAAUCGAA-----UUGAUUCGUGAAACUAAACUCCA-AAAGUCAACUAUAUAG .....((((((..........(((..(((.....)))..)))((((.(((.......((.((((((((...))))-----)))).))((........))))).-..))))...)))))). ( -26.20) >DroAna_CAF1 19101 106 - 1 UCGCUUACUUU----UCU--AGCAUUCGCAAUUAGCAAUUGCCGACAAGACCAAAGAGAUCCUACUCAGUUCGGUUCUAUUCAAUUCAUGGAAUCAAACUUCUCGAAUUCAA-------- ..(((......----...--)))(((((((((.....))))).............((((........((((.((((((((.......)))))))).))))))))))))....-------- ( -18.70) >consensus UUUCUUAUAUAUUACUCUGACGCAUUCGCAAUUAGCGAUUGCGGCUAGGAAAAAAGAGAUUCGAUUCGAAUCGAA_C_AUUUGAUUCGUGAAACUAAACUCCA_AAAGUCAACUAUAUAG ...............(((..((((..(((.....)))..))))....))).........(((....((((((((......)))))))).)))............................ (-13.56 = -14.23 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:29 2006