Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 9,104,557 – 9,104,648 |
Length | 91 |
Max. P | 0.514824 |
Location | 9,104,557 – 9,104,648 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.67 |
Mean single sequence MFE | -20.96 |
Consensus MFE | -13.38 |
Energy contribution | -12.75 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.33 |
Mean z-score | -1.41 |
Structure conservation index | 0.64 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514824 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 9104557 91 + 27905053 AAUGGCUGUUUACUCAGCAAGCUGUACAAAAAACACCCAAAAGAAUCGAGA-------------------AAUUAUUGGCCCAUUU------CAUGAGUCGCUU----GGCCAAAUAUUU ..(((.(((((...(((....)))......))))).)))............-------------------.....((((((.....------............----))))))...... ( -15.43) >DroSim_CAF1 15384 91 + 1 AAUGGCUGUUUACUCAGCCAGCUCUACAAAAAACACCCAAAAGAAUAGAGC-------------------CAUUAUUGGCCCCUUU------CAUGAGUCGCUU----GGCCAAAUAUUU ..((((((......))))))((((((...................))))))-------------------.....((((((.(((.------...)))......----))))))...... ( -22.41) >DroYak_CAF1 14630 91 + 1 AAUUGCUGUUUACUCAGCGAGCUCUACAACAAACACCCAAAAGAAUCGAGC-------------------CAUUAUUGGCCCAUUU------CAUGAGCCGGUU----GGCCAAAUAUUU ..((((((......))))))...........................(.((-------------------((..((((((.(((..------.))).)))))))----))))........ ( -20.20) >DroAna_CAF1 17351 120 + 1 AAUGGCUGUUUGCCCAGUUAGCUCUAAACAAAAAUUCCAAAAGAACCGAAAGAGCCGAGGCGGCCAAGCCAAUAAUUGGCUCAUCUUUAUCGCAUAUGUCACUUUGCUAGCCAAAUAUUU ...(((.....)))..((((((.....(((....(((.....)))......((((((((((......))).....)))))))..............)))......))))))......... ( -25.80) >consensus AAUGGCUGUUUACUCAGCAAGCUCUACAAAAAACACCCAAAAGAAUCGAGA___________________AAUUAUUGGCCCAUUU______CAUGAGUCGCUU____GGCCAAAUAUUU ..((((((......)))))).......................................................((((((...........................))))))...... (-13.38 = -12.75 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:28 2006